Ligand clusters for UniProt code O96935

Ligand clusters for O96935: M1 family aminopeptidase OS=Plasmodium falciparum (isolate FcB1 / Columbia) OX=186763 PE=1 SV=2

		Top 6 (of 24) ligand clusters Cluster 1. 49 ligand types 163 ligands Cluster 2. 3 ligand types 14 ligands Cluster 3. 3 ligand types 9 ligands Cluster 4. 3 ligand types 36 ligands Cluster 5. 3 ligand types 4 ligands Cluster 6. 2 ligand types 4 ligands
Representative protein: 5y1xA

Structures

PDB		Schematic diagram
5y1xA
5y3iA
5y1sA
5y1rA
5y1tA
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Cluster 1 contains 49 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 49 glycerin Glycerol PDB codes: 3ebg(A), 3ebh(A), 3ebi(A), 3q43(A), 3q44(A), 4k5m(A), 4k5n(A), 4k5o(A), 4k5p(A), 4r5t(A), 4r5v(A), 4r5x(A), 4x2u(A), 4zw3(A), 4zw6(A), 4zw7(A), 4zw8(A), 4zx4(A), 5xm7(A), 5y1h(A), 5y1k(A), 5y1s(A), 5y1t(A), 5y1v(A), 5y3i(A), 6ea1(A), 6ea2(A), 6eaa(A), 6eab(A), 6ee4(A), 6ee6(A), 6eed(A).
		2. Ligand: DMS × 11 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4r5t(A), 4r5x(A), 4zw6(A), 4zw8(A), 4zx3(A), 4zx5(A), 4zx6(A), 6ea2(A), 6eed(A).
_Mg		3. Metal: _MG × 10 PDB codes: 3q43(A), 5y1h(A), 5y1k(A), 5y1q(A), 5y1r(A), 5y1s(A), 5y1t(A), 5y3i(A), 6eab(A), 6ee4(A).
_Zn		4. Metal: _ZN × 45 PDB codes: 3ebg(A), 3ebh(A), 3ebi(A), 3q43(A), 3q44(A), 3t8v(A), 4j3b(A), 4k5l(A), 4k5m(A), 4k5n(A), 4k5o(A), 4k5p(A), 4r5t(A), 4r5v(A), 4r5x(A), 4x2u(A), 4zw3(A), 4zw5(A), 4zw6(A), 4zw7(A), 4zw8(A), 4zx3(A), 4zx4(A), 4zx5(A), 4zx6(A), 5xm7(A), 5y19(A), 5y1h(A), 5y1k(A), 5y1q(A), 5y1r(A), 5y1s(A), 5y1t(A), 5y1v(A), 5y1w(A), 5y1x(A), 5y3i(A), 6ea1(A), 6ea2(A), 6eaa(A), 6eab(A), 6ee3(A), 6ee4(A), 6ee6(A), 6eed(A).
		5. Ligand: PO4 × 4 Phosphate ion PDB codes: 4zw3(A), 6eab(A), 6ee4(A), 6eed(A).
		6. Ligand: 19N × 1 [(1r)-1-Amino-5-Carbamimidamidopentyl]phosphonic acid PDB code: 4k5l(A).
		7. Ligand: 1OS × 1 [(R)-Amino(4-Carbamimidoylphenyl)methyl]phosphonic acid PDB code: 4k5p(A).
		8. Ligand: 1OT × 1 {(R)-Amino[4-(1h-Pyrazol-1-Yl)phenyl]methyl}phosphonic acid PDB code: 4k5o(A).
		9. Ligand: 1OU × 1 [(R)-Amino(4-Carbamimidamidophenyl)methyl]phosphonic acid PDB code: 4k5n(A).
		10. Ligand: 1OV × 1 [(1r)-1-Amino-4-Carbamimidamidobutyl]phosphonic acid PDB code: 4k5m(A).
		11. Ligand: 4S9 × 1 Tert-Butyl [(1s)-1-(4-Bromophenyl)-2-(Hydroxyamino)-2- Oxoethyl]carbamate PDB code: 4zw3(A).
		12. Ligand: 4SA × 1 Tert-Butyl [(1s)-1-(Biphenyl-4-Yl)-2-(Hydroxyamino)-2- Oxoethyl]carbamate PDB code: 4zw5(A).
		13. Ligand: 4SY × 1 Tert-Butyl {(1s)-2-(Hydroxyamino)-1-[4-(1-Methyl-1h- Pyrazol-4-Yl)phenyl]-2-Oxoethyl}carbamate PDB code: 4zw6(A).
		14. Ligand: 4SZ × 1 Tert-Butyl [(1s)-2-(Hydroxyamino)-2-Oxo-1-(3',4',5'- Trifluorobiphenyl-4-Yl)ethyl]carbamate PDB code: 4zw7(A).
		15. Ligand: 4T2 × 1 Tert-Butyl {(1s)-2-(Hydroxyamino)-1-[3'-(N'- Hydroxycarbamimidoyl)biphenyl-4-Yl]-2- Oxoethyl}carbamate PDB code: 4zw8(A).
		16. Ligand: 4TK × 1 N-[(1r)-1-(4-Bromophenyl)-2-(Hydroxyamino)-2-Oxoethyl]- 2,2-Dimethylpropanamide PDB code: 4zx3(A).
		17. Ligand: 4TL × 1 N-[(1r)-2-(Hydroxyamino)-2-Oxo-1-(3',4',5'- Trifluorobiphenyl-4-Yl)ethyl]-2,2-Dimethylpropanamide PDB code: 4zx4(A).
		18. Ligand: 4TM × 1 N-{(1r)-2-(Hydroxyamino)-2-Oxo-1-[4-(Thiophen-3-Yl) phenyl]ethyl}-2,2-Dimethylpropanamide PDB code: 4zx5(A).
		19. Ligand: 4U6 × 1 N-{(1r)-2-(Hydroxyamino)-1-[3'-(N'- Hydroxycarbamimidoyl)biphenyl-4-Yl]-2-Oxoethyl}-2,2- Dimethylpropanamide PDB code: 4zx6(A).
		20. Ligand: 89X × 1 (2s)-4-Methyl-N-[(1r)-2-(Oxidanylamino)-2- Oxidanylidene-1-Phenyl-Ethyl]-2- [(Phenylmethyl) carbamoylamino]pentanamide PDB code: 5xm7(A).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 12 glycerin Glycerol PDB codes: 3ebg(A), 3ebh(A), 3ebi(A), 3q43(A), 4r5t(A), 4x2u(A), 4zw7(A), 4zw8(A), 4zx4(A), 5xm7(A), 6ea1(A), 6eed(A).
		2. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 6ea2(A).
		3. Ligand: PO4 × 1 Phosphate ion PDB code: 6ee4(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 5xm7(A), 6ea1(A), 6eaa(A), 6ee6(A), 6eed(A).
		2. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4r5x(A), 4zw7(A), 4zx6(A).
		3. Ligand: PO4 × 1 Phosphate ion PDB code: 4zw6(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 34 PDB codes: 3ebg(A), 3ebh(A), 3ebi(A), 3q43(A), 3t8v(A), 4j3b(A), 4k5l(A), 4k5m(A), 4k5n(A), 4k5o(A), 4r5x(A), 4x2u(A), 4zw5(A), 4zx3(A), 4zx5(A), 5xm7(A), 5y19(A), 5y1h(A), 5y1k(A), 5y1q(A), 5y1r(A), 5y1s(A), 5y1t(A), 5y1v(A), 5y1w(A), 5y3i(A), 6ea1(A), 6ea2(A), 6eaa(A), 6eab(A), 6ee3(A), 6ee4(A), 6ee6(A), 6eed(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 4r5t(A).
		3. Ligand: PO4 × 1 Phosphate ion PDB code: 6ee4(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3ebg(A), 5xm7(A).
		2. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 4r5t(A).
_Mg		3. Metal: _MG × 1 PDB code: 3ebi(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4x2u(A).
		2. Ligand: PO4 × 3 Phosphate ion PDB codes: 4zx4(A), 6eaa(A), 6ee3(A).