Ligand clusters for UniProt code O58456

Ligand clusters for O58456: Diphthine synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=dphB PE=1 SV=1

		Top 6 (of 18) ligand clusters Cluster 1. 5 ligand types 106 ligands Cluster 2. 4 ligand types 26 ligands Cluster 3. 2 ligand types 22 ligands Cluster 4. 2 ligand types 19 ligands Cluster 5. 2 ligand types 16 ligands Cluster 6. 2 ligand types 3 ligands
Representative protein: 1vceA

Structures

PDB		Schematic diagram
1vceA
2ek4A
2eglA
2owfA
2emuA
		more ...

Cluster 1 contains 5 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: SAH × 50 S-Adenosyl-L-Homocysteine PDB codes: 1vce(A), 1wng(A), 2dek(A), 2dsg(A), 2dsh(A), 2dsi(A), 2dv3(A), 2dv4(A), 2dv5(A), 2dv7(A), 2dxv(A), 2dxw(A), 2dxx(A), 2e07(A), 2e08(A), 2e15(A), 2e16(A), 2e17(A), 2e4n(A), 2e4r(A), 2e7r(A), 2e8h(A), 2e8q(A), 2e8r(A), 2e8s(A), 2ed3(A), 2ed5(A), 2eeq(A), 2egb(A), 2ehc(A), 2ehl(A), 2ejj(A), 2ejk(A), 2hr8(A), 2huq(A), 2hut(A), 2huv(A), 2hux(A), 2owf(A), 2owg(A), 2owk(A), 2owu(A), 2owv(A), 2p2x(A), 2p5c(A), 2p5f(A), 2p6d(A), 2p6i(A), 2p6k(A), 2z6r(A).
		2. Ligand: GOL × 1 Glycerol PDB code: 2ejj(A).
		3. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2ejj(A).
		4. Ligand: SAH × 32 S-Adenosyl-L-Homocysteine PDB codes: 2egl(A), 2egs(A), 2eh2(A), 2eh4(A), 2eh5(A), 2ejz(A), 2ek2(A), 2ek3(A), 2ek4(A), 2ek7(A), 2eka(A), 2el0(A), 2el1(A), 2el2(A), 2el3(A), 2eld(A), 2ele(A), 2emr(A), 2emu(A), 2en5(A), 2eni(A), 2p6l(A), 2p9d(A), 2pb4(A), 2pb5(A), 2pb6(A), 2pca(A), 2pcg(A), 2pch(A), 2pci(A), 2pck(A), 2pcm(A).
		5. Ligand: SO4 × 22 Sulfate ion PDB codes: 1wng(A), 2dsg(A), 2dsh(A), 2dsi(A), 2dv4(A), 2dv5(A), 2dv7(A), 2dxv(A), 2dxw(A), 2dxx(A), 2e07(A), 2e08(A), 2e15(A), 2e16(A), 2e17(A), 2e7r(A), 2egb(A), 2egs(A), 2eh2(A), 2ehc(A), 2ehl(A), 2ejk(A).

Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 Glycerol PDB code: 2eeq(A).
		2. Ligand: MES × 23 2-(N-Morpholino)-Ethanesulfonic acid PDB codes: 2dsg(A), 2dsh(A), 2dsi(A), 2dv4(A), 2dv5(A), 2dv7(A), 2dxv(A), 2dxw(A), 2dxx(A), 2e07(A), 2e08(A), 2e15(A), 2e16(A), 2e17(A), 2e7r(A), 2egb(A), 2ehc(A), 2ehl(A), 2ejj(A), 2z6r(A), 2egl(A), 2egs(A), 2eh2(A).
		3. Ligand: GOL × 1 Glycerol PDB code: 2ejz(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 2ejk(A).

Cluster 3 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 Glycerol PDB code: 2z6r(A).
		2. Ligand: SO4 × 21 Sulfate ion PDB codes: 1wng(A), 2dsg(A), 2dsh(A), 2dsi(A), 2dv4(A), 2dv5(A), 2dv7(A), 2dxv(A), 2dxw(A), 2dxx(A), 2e07(A), 2e08(A), 2e15(A), 2e16(A), 2e17(A), 2e7r(A), 2egb(A), 2egl(A), 2egs(A), 2ehc(A), 2ehl(A).

Cluster 4 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 16 Glycerol PDB codes: 2dsh(A), 2dsi(A), 2dv3(A), 2dv4(A), 2dv5(A), 2dv7(A), 2dxv(A), 2dxw(A), 2dxx(A), 2e07(A), 2e08(A), 2e15(A), 2e17(A), 2ehc(A), 2ehl(A), 2p5c(A).
		2. Ligand: SO4 × 3 Sulfate ion PDB codes: 2eeq(A), 2egs(A), 2z6r(A).

Cluster 5 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 15 Glycerol PDB codes: 2dsh(A), 2dsi(A), 2dv4(A), 2dv5(A), 2dv7(A), 2dxv(A), 2dxw(A), 2dxx(A), 2e07(A), 2e08(A), 2e15(A), 2e16(A), 2e17(A), 2e7r(A), 2ehc(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 2z6r(A).

Cluster 6 contains 2 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 2 Glycerol PDB codes: 2egb(A), 2ehc(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 2dsi(A).