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Ligand clusters for UniProt code O57767
Ligand clusters for O57767: Quinolinate synthase A OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=nadA PE=1 SV=1
6 ligand clusters
Cluster 1.
14 ligand types
21 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
5 ligands
Cluster 6.
1 ligand type
4 ligands
Representative protein: 5ktnA
Structures
PDB
Schematic diagram
5ktn
A
4zk6
A
6ora
A
6nso
A
5ktm
A
more ...
Cluster 1 contains 14 ligand types
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Ligand
Description
1. Ligand:
SF4 × 5
Iron/sulfur cluster
PDB codes:
5ktm
(A),
5ktp
(A),
5ktr
(A),
5kts
(A),
6ora
(A).
2. Ligand:
SF4-NTM × 2
SF4
=Iron/sulfur cluster,
NTM
=Quinolinic acid.
PDB codes:
4zk6
(A),
5kto
(A).
_Cl
3. Metal:
_CL × 2
PDB codes:
4zk6
(A),
5kto
(A).
_Na
4. Metal:
_NA × 2
PDB codes:
4zk6
(A),
5. Ligand:
13P-SF4 × 1
13P
=1,3-Dihydroxyacetonephosphate,
SF4
=Iron/sulfur cluster.
PDB code:
6nso
(A).
6. Ligand:
5XW × 1
(2~{z})-2-(1-Oxidanyl-3-Oxidanylidene-Propyl) iminobutanedioic acid
PDB code:
6ora
(A).
7. Ligand:
CIZ × 1
(~{Z})-2-Methylbut-2-Enedioic acid
PDB code:
5kts
(A).
8. Ligand:
ITN × 1
2-Methylidenebutanedioic acid
PDB code:
5ktp
(A).
9. Ligand:
MAE × 1
Maleic acid
PDB code:
5ktr
(A).
10. Ligand:
MLT × 1
Malate ion
PDB code:
1wzu
(A).
11. Ligand:
SF4-13P × 1
SF4
=Iron/sulfur cluster,
13P
=1,3-Dihydroxyacetonephosphate.
PDB code:
5ktn
(A).
12. Ligand:
SF4-5XR × 1
SF4
=Iron/sulfur cluster,
5XR
=2-Hydroxy-N-[(1s)-1-Hydroxy-3-Oxopropyl]-L-Aspartic acid.
PDB code:
6or8
(A).
13. Ligand:
SF4-DYA × 1
SF4
=Iron/sulfur cluster,
DYA
=Didehydroaspartate.
PDB code:
6nsu
(A).
14. Ligand:
SF4-LMR × 1
SF4
=Iron/sulfur cluster,
LMR
=(2s)-2-Hydroxybutanedioic acid.
PDB code:
5ktt
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code:
5kto
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
6or8
(A).
_Cl
2. Metal:
_CL × 1
PDB code:
5kto
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
ACT × 1
Acetate ion
PDB code:
6ora
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 5
PDB codes:
5ktn
(A),
5kto
(A),
5ktr
(A),
5kts
(A),
6ora
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 4
PDB codes:
5ktn
(A),
5ktp
(A),
5ktr
(A),
5kts
(A).