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Ligand clusters for UniProt code O57767

Ligand clusters for O57767: Quinolinate synthase A OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=nadA PE=1 SV=1

6 ligand clusters
Cluster 1.
14 ligand types
21 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
5 ligands
Cluster 6.
1 ligand type
4 ligands
Representative protein: 5ktnA  
JSmol
 

Structures

PDB   Schematic diagram
5ktnA    
4zk6A    
6oraA    
6nsoA    
5ktmA    
 more ...

 

 Cluster 1 contains 14 ligand types

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Ligand Description


 
1. Ligand: SF4 × 5
Iron/sulfur cluster
PDB codes: 5ktm(A), 5ktp(A), 5ktr(A), 5kts(A), 6ora(A).


 
2. Ligand: SF4-NTM × 2
SF4=Iron/sulfur cluster, NTM=Quinolinic acid.
PDB codes: 4zk6(A), 5kto(A).

_Cl
 
3. Metal: _CL × 2
PDB codes: 4zk6(A), 5kto(A).

_Na
 
4. Metal: _NA × 2
PDB codes: 4zk6(A),


 
5. Ligand: 13P-SF4 × 1
13P=1,3-Dihydroxyacetonephosphate, SF4=Iron/sulfur cluster.
PDB code: 6nso(A).


 
6. Ligand: 5XW × 1
(2~{z})-2-(1-Oxidanyl-3-Oxidanylidene-Propyl) iminobutanedioic acid
PDB code: 6ora(A).


 
7. Ligand: CIZ × 1
(~{Z})-2-Methylbut-2-Enedioic acid
PDB code: 5kts(A).


 
8. Ligand: ITN × 1
2-Methylidenebutanedioic acid
PDB code: 5ktp(A).


 
9. Ligand: MAE × 1
Maleic acid
PDB code: 5ktr(A).


 
10. Ligand: MLT × 1
Malate ion
PDB code: 1wzu(A).


 
11. Ligand: SF4-13P × 1
SF4=Iron/sulfur cluster, 13P=1,3-Dihydroxyacetonephosphate.
PDB code: 5ktn(A).


 
12. Ligand: SF4-5XR × 1
SF4=Iron/sulfur cluster, 5XR=2-Hydroxy-N-[(1s)-1-Hydroxy-3-Oxopropyl]-L-Aspartic acid.
PDB code: 6or8(A).


 
13. Ligand: SF4-DYA × 1
SF4=Iron/sulfur cluster, DYA=Didehydroaspartate.
PDB code: 6nsu(A).


 
14. Ligand: SF4-LMR × 1
SF4=Iron/sulfur cluster, LMR=(2s)-2-Hydroxybutanedioic acid.
PDB code: 5ktt(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 5kto(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: PO4 × 1
Phosphate ion
PDB code: 6or8(A).

_Cl
 
2. Metal: _CL × 1
PDB code: 5kto(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 6ora(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Cl
 
1. Metal: _CL × 5
PDB codes: 5ktn(A), 5kto(A), 5ktr(A), 5kts(A), 6ora(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Cl
 
1. Metal: _CL × 4
PDB codes: 5ktn(A), 5ktp(A), 5ktr(A), 5kts(A).

 

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