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List of PDB entries containing Het Group DPP

Het Group: DPP
 
PDB code:
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Name: Diaminopropanoic acid
Formula: C3H8N2O2
Compound type: L-Peptide linking
The following 59 PDB entries contain the Het Group DPP. The count column shows its number of occurrence in the structure.

PDB id Count Name Method Date
1b5h   ×0   Oligo-peptide binding protein complexed with lysyl-diaminopropanoic acid-lysine   X-ray(1.9Å)   18-Nov-98
1jd8   ×0   Solution structure of lactam analogue dapd of HIV gp41 600-612 loop   NMR(20 models)   01-Jul-03
3j5t   ×0   Structure of the ribosome with elongation factor g trapped i translocation state (pre-translocation 70s tRNA structure, subunit with hybrid a/p and p/e trnas and viomycin)     18-Dec-13
3j5x   ×0   Structure of the ribosome with elongation factor g trapped i translocation state (pre-translocation 70s tRNA Ef-g struct subunit with hybrid a/p And p/e trnas, ef-g, and viomycin)     18-Dec-13
3knh   ×0   The structures of viomycin bound to the 70s ribosome. This file contains the 30s subunit for molecule i   X-ray(3Å)   16-Feb-10
3knj   ×0   The structures of viomycin bound to the 70s ribosome. This file contains the 30s subunit for molecule ii'   X-ray(3.15Å)   23-Feb-10
3knl   ×0   The structures of capreomycin bound to the 70s ribosome. This file contains the 30s subunit for molecule i   X-ray(3.45Å)   23-Feb-10
3knn   ×0   The structures of capreomycin bound to the 70s ribosome. This file contains the 30s subunit for molecule ii   X-ray(3.45Å)   23-Feb-10
3sfs   ×0   Crystal structure of release factor rf3 trapped in the gtp state on a rotated conformation of the ribosome   X-ray(3.2Å)   11-Jan-12
4kbt   ×0   70s ribosome translocation intermediate gdpnp-ii containing elongation factor efg/gdpnp, mRNA, and tRNA bound in the pe /E state. This entry contains 30s ribosomal subunit a. The full asymmetric unit also contains PDB entries 4kbu (50s subunit a), 4kbv (30s subunit b), and 4kbw (50s subunit b).   X-ray(3.86Å)   03-Jul-13
4kbv   ×0   70s ribosome translocation intermediate gdpnp-ii containing elongation factor efg/gdpnp, mRNA, and tRNA bound in the pe /E state. This entry contains 30s ribosomal subunit b. The full asymmetric unit also contains PDB entries 4kbw (50s subunit b), 4kbt (30s subunit a), and 4kbu (50s subunit a).   X-ray(3.86Å)   03-Jul-13
4kcy   ×0   70s ribosome translocation intermediate gdpnp-i containing elongation factor efg/gdpnp, mRNA, and tRNA bound in the pe /E state. This entry contains the 30s ribosomal subunit a. The 50s subunit a can be found in 4kcz. Molecule b in the same asymmetric unit is deposited as 4kd0 (30s) and 4kd2 (50s)   X-ray(3.5Å)   03-Jul-13
4kd0   ×0   70s ribosome translocation intermediate gdpnp-i containing elongation factor efg/gdpnp, mRNA, and tRNA bound in the pe /E state. This entry contains the 30s ribosomal subunit b. The 50s subunit b can be found in 4kd2. Molecule a in the same asymmetric unit is deposited as 4kcy (30s) and 4kcz (50s)   X-ray(3.5Å)   03-Jul-13
4kd8   ×0   70s ribosome translocation intermediate fa-3.6a containing elongation factor efg/fusidic acid/gdp, mRNA, and tRNA bound in the pe /E state. This entry contains the 30s ribosomal subunit a. The 50s subunit a can be found in 4kd9. Molecule b in the same asymmetric unit is deposited as 4kda (30s) and 4kdb (50s).   X-ray(3.5Å)   03-Jul-13
4kda   ×0   70s ribosome translocation intermediate fa-3.6a containing elongation factor efg/fusidic acid/gdp, mRNA, and tRNA bound in the pe /E state. This entry contains the 30s ribosomal subunit b. The 50s subunit a can be found in 4kdb. Molecule a in the same asymmetric unit is deposited as 4kd8 (30s) and 4kd9 (50s).   X-ray(3.5Å)   03-Jul-13
4kiy   ×0   Control of ribosomal subunit rotation by elongation factor g   X-ray(2.9Å)   17-Jul-13
4kj0   ×0   Control of ribosomal subunit rotation by elongation factor g   X-ray(2.9Å)   17-Jul-13
4kj2   ×0   Control of ribosomal subunit rotation by elongation factor g   X-ray(2.9Å)   17-Jul-13
4kj4   ×0   Control of ribosomal subunit rotation by elongation factor g   X-ray(2.9Å)   17-Jul-13
4kj6   ×0   Control of ribosomal subunit rotation by elongation factor g   X-ray(2.9Å)   17-Jul-13
4kj8   ×0   Control of ribosomal subunit rotation by elongation factor g   X-ray(2.9Å)   17-Jul-13
4kja   ×0   Control of ribosomal subunit rotation by elongation factor g   X-ray(2.9Å)   17-Jul-13
4ks6   ×0   Crystal structure of the catalytic domain of botulinum neurotoxin bont/a c134s mutant with covalent inhibitor that modifies cys-165 causing disorder in 166-174 stretch   X-ray(1.93Å)   25-Jun-14
4ktx   ×0   Crystal structure of the catalytic domain of botulinum neurotoxin bont/a c134s mutant with covalent inhibitor that modifies cys-165 causing disorder in 167-174 stretch   X-ray(2.59Å)   15-Oct-14
4xmt   ×0   Crystal structure of met260ala mutant of e. Coli aminopeptidase n in complex with l-2,3-diaminopropionic acid   X-ray(2Å)   02-Mar-16
4xn7   ×0   Crystal structure of e. Coli aminopeptidase n in complex with l-2,3- diaminopropionic acid   X-ray(2.22Å)   02-Mar-16
5cgg   ×1   Yeast 20s proteasome beta5-g48c mutant in complex with alpha- chloroacetamide 1   X-ray(2.9Å)   25-Nov-15
5cgh   ×1   Yeast 20s proteasome beta5-g48c mutant in complex with alpha- chloroacetamide 5   X-ray(2.5Å)   02-Dec-15
5gtr   ×0   Estrogen receptor alpha in complex with a stabilized peptide antagonist 6   X-ray(2.8Å)   30-Aug-17
6ecd   ×0   Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a tetradepsipeptide   X-ray(1.9Å)   12-Dec-18
6ece   ×1   Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a dodecadepsipeptide, space group h3   X-ray(2Å)   12-Dec-18
6ecf   ×5   Vlm2 thioesterase domain with genetically encoded 2,3-diaminopropionic acid bound with a dodecadepsipeptide, space group p1   X-ray(2.5Å)   12-Dec-18
6old   ×0   Csp1-cyc(dap6e10)   NMR(20 models)   08-Jan-20
6s5r   ×1   Cfucosylated second generation peptide dendrimer sbd6 bound to fucose binding lectin lecb (pa-iil) from pseudomonas aeruginosa at 2.08 angstrom resolution, incomplete structure   X-ray(2.08Å)   21-Aug-19
6s5s   ×1   Cfucosylated second generation peptide dendrimer sbd8 bound to fucose binding lectin lecb (pa-iil) from pseudomonas aeruginosa at 1.43 angstrom resolution   X-ray(1.43Å)   21-Aug-19
6v1n   ×0   Csp1-e1a-cyc(dap6e10)   NMR(20 models)   08-Jan-20
6wuu   ×3   Crystal structure of the sars cov-2 papain-like protease in complex with peptide inhibitor vir250   X-ray(2.79Å)   20-May-20
6wx4   ×0   Crystal structure of the sars cov-2 papain-like protease in complex with peptide inhibitor vir251   X-ray(1.66Å)   20-May-20
7f0c   ×0   Crystal structure of capreomycin phosphotransferase in complex with cmn iia   X-ray(2.07Å)   11-May-22
7f0f   ×0   Crystal structure of capreomycin phosphotransferase in complex with cmn iib   X-ray(2.1Å)   11-May-22
7lfu   ×0   Crystal structure of the sars cov-1 papain-like protease in complex with peptide inhibitor vir250   X-ray(2.29Å)   10-Nov-21
7lfv   ×1   Crystal structure of the sars cov-1 papain-like protease in complex with peptide inhibitor vir251   X-ray(2.23Å)   10-Nov-21
7uqw   ×2   Pcc6803 cyanophycinase s132dap covalently bound to cyanophycin dimer   X-ray(1.5Å)   10-Aug-22
7ure   ×0   Human porcn in complex with palmitoleoylated wnt3a peptide     20-Jul-22
8alx   ×0   Structure of human pd-l1 in complex with inhibitor   X-ray(1.1Å)   16-Aug-23
8cep   ×8   Kasugamycin bound to the 30s body     19-Jul-23
8ceu   ×14   Retapamulin and capreomycin bound to the 50s subunit     26-Jul-23
8fvp   ×0   Pcsk9 in complex with an inhibitor   X-ray(2.6Å)   16-Oct-24
8i82   ×0   Crystal structure of cph001-d189n in complex with cmn iia   X-ray(1.95Å)   10-Jan-24
8i84   ×0   Crystal structure of cph001-d189n in complex with cmn iib   X-ray(2.2Å)   10-Jan-24
8i89   ×0   Crystal structure of cph001-d189n in complex with vio   X-ray(2Å)   10-Jan-24
8i8g   ×0   Crystal structure of cph001-d189n in complex with cmn iia and atp   X-ray(3Å)   10-Jan-24
8i8h   ×0   Crystal structure of cph001-d189n in complex with vio and atp   X-ray(2.02Å)   10-Jan-24
8tlv   ×0   Crystal structure of mbp and af9 ahd fusion protein 4aqk in complex with peptidomimetic inhibitor 28   X-ray(2.66Å)   29-May-24
8tlw   ×0   Crystal structure of mbp and af9 ahd fusion protein 3aqa in complex with peptidomimetic inhibitor 28   X-ray(2.11Å)   29-May-24
8tlx   ×0   Crystal structure of mbp and af9 ahd fusion protein 3aqa in complex with peptidomimetic inhibitor 21a   X-ray(2.1Å)   29-May-24
8utl   ×0   Bovine trypsin in complex with thr3dap mutated microviridin j   X-ray(1.56Å)   14-Feb-24
8v4b   ×0   Nmr structure of a synthetic analogue of ramoplanin a2   NMR(20 models)   16-Apr-25
9n1u   ×0   High-resolution crystal structure of 2,3-diamino propanoic acid bound adenylation domain (a3) from sulfazecin nonribosomal peptide synthetase sulm   X-ray(1.55Å)   28-May-25

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