Ligand clusters for UniProt code D0VWR7

Ligand clusters for D0VWR7: Photosystem II CP43 reaction center protein (Fragment) from Thermosynechococcus vulcanus

		Top 6 (of 15) ligand clusters Cluster 1. 15 ligand types 718 ligands Cluster 2. 4 ligand types 29 ligands Cluster 3. 2 ligand types 20 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 3wu2C

Structures

PDB		Schematic diagram
3wu2C
7cjiC
7cjjC
4ub8C
5gtiC
		more ...

Cluster 1 contains 15 ligand types

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Ligand		Description
		1. Ligand: BCR × 98 beta carotene Beta-Carotene PDB codes: 3a0b(C), 3a0h(C), 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7czl(C), 7d1t(C), 7d1u(C),
		2. Ligand: DMS × 6 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4il6(C), 5b5e(C), 5b66(C),
		3. Ligand: GOL × 1 glycerin Glycerol PDB code: 5v2c(C).
		4. Ligand: CLA × 323 Chlorophyll a PDB codes: 3a0b(C), 3a0h(C), 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7czl(C), 7d1t(C), 7d1u(C),
		5. Ligand: LMG × 83 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7d1t(C), 7d1u(C),
		6. Ligand: DGD × 75 Digalactosyl diacyl glycerol (dgdg) PDB codes: 3a0b(C), 3a0h(C), 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7czl(C), 7d1t(C), 7d1u(C),
		7. Ligand: LMT × 28 Dodecyl-Beta-D-Maltoside PDB codes: 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7d1t(C), 7d1u(C),
		8. Ligand: LHG × 27 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 3a0b(C), 3a0h(C), 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7czl(C), 7d1t(C), 7d1u(C).
		9. Ligand: UNL × 25 Unknown ligand PDB codes: 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7d1t(C), 7d1u(C),
		10. Ligand: HTG × 24 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C).
		11. Ligand: SQD × 23 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7czl(C), 7d1t(C), 7d1u(C).
		12. Ligand: PG4 × 2 Tetraethylene glycol PDB codes: 5v2c(C),
		13. Ligand: CLA-CLA × 1 CLA=Chlorophyll a. PDB code: 7czl(C).
		14. Ligand: MGE × 1 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB code: 7czl(C).
		15. Ligand: P6G × 1 Hexaethylene glycol PDB code: 5v2c(C).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: OEX × 21 Ca-Mn4-O5 cluster PDB codes: 3wu2(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws5(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C), 7cji(C), 7cjj(C), 7d1t(C), 7d1u(C).
		2. Ligand: OEY × 5 Ca-Mn4-O6 cluster PDB codes: 5ws6(C), 6jll(C), 6jln(C), 6jlo(C), 6jlp(C).
		3. Ligand: OEC × 2 Oxygen evolving system PDB codes: 3a0b(C), 3a0h(C).
		4. Ligand: OER × 1 Sr-Mn4-O5 cluster PDB code: 4il6(C).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: HTG × 19 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(C), 4il6(C), 4ub6(C), 4ub8(C), 5b5e(C), 5b66(C), 5gth(C), 5gti(C), 5v2c(C), 5ws6(C), 6jlj(C), 6jlk(C), 6jll(C), 6jlm(C), 6jln(C), 6jlo(C), 6jlp(C).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(C).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5v2c(C).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(C).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5v2c(C).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 5v2c(C).