Ligand clusters for UniProt code D0VWR4

Ligand clusters for D0VWR4: Photosystem II reaction center protein X (Fragment) from Thermosynechococcus vulcanus

		3 ligand clusters Cluster 1. 13 ligand types 250 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand
Representative protein: 4il6X

Structures

PDB		Schematic diagram
4il6X
7couX
7d1tX
6jloX
5b5eX
		more ...

Cluster 1 contains 13 ligand types

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Ligand		Description
		1. Ligand: BCR × 27 beta carotene Beta-Carotene PDB codes: 3a0b(X), 3a0h(X), 4il6(X), 4ub6(X), 4ub8(X), 5gth(X), 5gti(X), 5ws5(X), 5ws6(X), 6jlj(X), 6jlk(X), 6jll(X), 6jlm(X), 6jln(X), 6jlo(X), 6jlp(X), 7cji(X), 7cjj(X), 7cou(X).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 5v2c(X).
		3. Ligand: UNL × 87 Unknown ligand PDB codes: 3wu2(X), 4il6(X), 4ub6(X), 4ub8(X), 5b5e(X), 5b66(X), 5gth(X), 5gti(X), 5ws5(X), 5ws6(X), 6jlj(X), 6jlk(X), 6jll(X), 6jlm(X), 6jln(X), 6jlo(X), 6jlp(X), 7cji(X), 7cjj(X), 7cou(X), 7d1t(X), 7d1u(X),
		4. Ligand: CLA × 34 Chlorophyll a PDB codes: 3a0b(X), 3a0h(X), 3wu2(X), 4il6(X), 4ub6(X), 4ub8(X), 5b5e(X), 5b66(X), 5gth(X), 5gti(X), 5v2c(X), 5ws5(X), 5ws6(X), 6jlj(X), 6jlk(X), 6jll(X), 6jlm(X), 6jln(X), 6jlo(X), 6jlp(X), 7cji(X), 7cjj(X), 7cou(X), 7d1t(X), 7d1u(X).
		5. Ligand: PL9 × 32 2,3-Dimethyl-5-(3,7,11,15,19,23,27,31,35-Nonamethyl-2, 6,10,14,18,22,26,30,34- Hexatriacontanonaenyl-2,5- Cyclohexadiene-1,4-Dione-2,3-Dimethyl-5-Solanesyl-1,4- Benzoquinone PDB codes: 3wu2(X), 4il6(X), 4ub6(X), 4ub8(X), 5b5e(X), 5b66(X), 5gth(X), 5gti(X), 5v2c(X), 5ws5(X), 5ws6(X), 6jlj(X), 6jlk(X), 6jll(X), 6jlm(x), 6jln(x), 6jlo(x), 6jlp(X), 7cji(X), 7cjj(X), 7cou(X), 7d1t(X), 7d1u(X).
		6. Ligand: SQD × 32 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 3wu2(X), 4il6(X), 4ub6(X), 4ub8(X), 5b5e(X), 5b66(x), 5gth(X), 5gti(X), 5v2c(X), 5ws5(X), 5ws6(X), 6jlj(X), 6jlk(X), 6jll(X), 6jlm(X), 6jln(X), 6jlo(X), 6jlp(X), 7cji(X), 7cjj(X), 7cou(X), 7d1t(X), 7d1u(X).
		7. Ligand: LMT × 21 Dodecyl-Beta-D-Maltoside PDB codes: 3wu2(X), 4il6(X), 4ub6(X), 4ub8(X), 5b5e(X), 5gth(X), 5gti(X), 5v2c(X), 5ws5(X), 5ws6(X), 6jlj(X), 6jlk(X), 6jll(X), 6jlm(X), 6jln(X), 6jlo(X), 6jlp(X), 7cji(X), 7cjj(X), 7cou(X).
		8. Ligand: RRX × 6 (3r)-Beta,Beta-Caroten-3-Ol PDB codes: 3wu2(X), 5b5e(X), 5b66(X), 7d1t(X), 7d1u(X).
		9. Ligand: PG4 × 4 Tetraethylene glycol PDB codes: 5v2c(X),
		10. Ligand: LMG × 2 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 5b5e(X), 5v2c(X).
		11. Ligand: P6G × 2 Hexaethylene glycol PDB codes: 5v2c(X),
		12. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5v2c(X).
		13. Ligand: HTG × 1 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB code: 4il6(x).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: BCR × 1 beta carotene Beta-Carotene PDB code: 5v2c(X).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(X).