Ligand clusters for UniProt code D0VWR1

Ligand clusters for D0VWR1: Photosystem II CP47 reaction center protein (Fragment) from Thermosynechococcus vulcanus

		Top 6 (of 23) ligand clusters Cluster 1. 18 ligand types 912 ligands Cluster 2. 2 ligand types 21 ligands Cluster 3. 3 ligand types 4 ligands Cluster 4. 2 ligand types 3 ligands Cluster 5. 2 ligand types 21 ligands Cluster 6. 2 ligand types 13 ligands
Representative protein: 4il6B

Structures

PDB		Schematic diagram
4il6B
7couB
7cjjB
7cjiB
4ub8B
		more ...

Cluster 1 contains 18 ligand types

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Ligand		Description
		1. Ligand: BCR × 104 beta carotene Beta-Carotene PDB codes: 3a0b(B), 3a0h(B), 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7czl(B), 7d1t(B), 7d1u(B),
		2. Ligand: GOL × 19 glycerin Glycerol PDB codes: 3wu2(B), 4ub6(B), 4ub8(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B).
		3. Ligand: DMS × 4 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4il6(B), 5b5e(B), 5b66(B).
		4. Ligand: CLA × 416 Chlorophyll a PDB codes: 3a0b(B), 3a0h(B), 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7czl(B), 7d1t(B), 7d1u(B),
		5. Ligand: HTG × 73 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B),
		6. Ligand: LMT × 65 Dodecyl-Beta-D-Maltoside PDB codes: 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7czl(B),
		7. Ligand: UNL × 63 Unknown ligand PDB codes: 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7d1t(B), 7d1u(B),
		8. Ligand: SQD × 48 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7czl(B), 7d1t(B), 7d1u(B),
		9. Ligand: LHG × 46 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7d1t(B), 7d1u(B),
		10. Ligand: DGD × 26 Digalactosyl diacyl glycerol (dgdg) PDB codes: 3a0b(B), 3a0h(B), 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7czl(B), 7d1t(B), 7d1u(B).
		11. Ligand: LMG × 25 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3wu2(B), 4il6(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B), 7d1t(B), 7d1u(B).
		12. Ligand: PG4 × 8 Tetraethylene glycol PDB codes: 5v2c(B),
		13. Ligand: MGE × 7 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB codes: 3a0b(B), 3a0h(B), 7czl(B),
		14. Ligand: P6G × 3 Hexaethylene glycol PDB codes: 5v2c(B),
		15. Ligand: PGE × 2 Triethylene glycol PDB codes: 5v2c(B),
		16. Ligand: 1PE × 1 Pentaethylene glycol PDB code: 5v2c(B).
		17. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5v2c(B).
Iod		18. Metal: IOD × 1 PDB code: 3a0h(B).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 4il6(B).
		2. Ligand: HTG × 20 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(B), 4ub6(B), 4ub8(B), 5b5e(B), 5b66(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(B), 5b66(B).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 5v2c(B).
		3. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(B).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(B), 5b66(B).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(B).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 18 glycerin Glycerol PDB codes: 3wu2(B), 4ub6(B), 4ub8(B), 5gth(B), 5gti(B), 5v2c(B), 5ws5(B), 5ws6(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B), 7cji(B), 7cjj(B), 7cou(B).
		2. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4il6(B), 5b5e(B), 5b66(B).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 11 glycerin Glycerol PDB codes: 3wu2(B), 4ub6(B), 4ub8(B), 5v2c(B), 6jlj(B), 6jlk(B), 6jll(B), 6jlm(B), 6jln(B), 6jlo(B), 6jlp(B).
		2. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(B), 5b66(B).