Ligand clusters for UniProt code D0C9L6

Ligand clusters for D0C9L6: Peptidyl-tRNA hydrolase OS=Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / CIP 70.34 / JCM 6841 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81) OX=575584 GN=pth PE=1 SV=1

		Top 6 (of 25) ligand clusters Cluster 1. 8 ligand types 10 ligands Cluster 2. 3 ligand types 6 ligands Cluster 3. 3 ligand types 6 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 2 ligand types 12 ligands Cluster 6. 2 ligand types 5 ligands
Representative protein: 3wh4A

Structures

PDB		Schematic diagram
3wh4A
4jx9A
5yl8A
4hoyA
4jwkA
		more ...

Cluster 1 contains 8 ligand types

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Ligand		Description
		1. Ligand: POL × 1 propyl alcohol N-Propanol PDB code: 6ix6(A).
		2. Ligand: PO4 × 2 Phosphate ion PDB codes: 4lwr(A), 5y9a(A).
_Cl		3. Metal: _CL × 2 PDB codes: 6ivv(A), 6kl8(A).
		4. Ligand: CTN × 1 4-Amino-1-Beta-D-Ribofuranosyl-2(1h)-Pyrimidinone PDB code: 4jwk(A).
		5. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6kl8(A).
		6. Ligand: TLA × 1 L(+)-Tartaric acid PDB code: 4olj(A).
		7. Ligand: URI × 1 Uridine PDB code: 4jx9(A).
_Na		8. Metal: _NA × 1 PDB code: 6kl8(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: AR3 × 2 cytarabine Cytarabine PDB codes: 4lwr(A), 5y9a(A).
		2. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3wh4(A), 4lwq(A).
		3. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 6ivv(A),

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 4hoy(A), 4iko(A), 4jy7(A).
		2. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 4fop(A), 4fot(A).
_Na		3. Metal: _NA × 1 PDB code: 6jkx(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 3 1,2-Ethanediol PDB codes: 4hoy(A), 4iko(A), 4jy7(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4fop(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 10 glycerin Glycerol PDB codes: 3wh4(A), 4fop(A), 4fot(A), 4hoy(A), 4iko(A), 4jy7(A), 4lwq(A), 4lwr(A), 4olj(A), 5y98(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 5zzv(A), 6jj1(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: PEG × 4 Di(hydroxyethyl)ether PDB codes: 4fop(A), 4hoy(A), 4iko(A), 4jy7(A).
_Na		2. Metal: _NA × 1 PDB code: 6jkx(A).