Ligand clusters for UniProt code B3TLD6

Ligand clusters for B3TLD6: Lacto-N-biosidase OS=Bifidobacterium bifidum JCM 1254 GN=lnbB PE=1 SV=1

		6 ligand clusters Cluster 1. 6 ligand types 6 ligands Cluster 2. 1 ligand type 3 ligands Cluster 3. 1 ligand type 4 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 3 ligands
Representative protein: 5bxpA

Structures

PDB		Schematic diagram
5bxpA
4jawA
5bxsA
5bxtA
4h04A
		more ...

Cluster 1 contains 6 ligand types

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Ligand		Description
		1. Ligand: 4WS-GAL × 1 4WS=N-{[(1r,2r,3r,7s,7ar)-1,2,7-Trihydroxyhexahydro-1h- Pyrrolizin-3-Yl]methyl}acetamide, GAL=Beta-D-Galactose. PDB code: 5bxt(A).
		2. Ligand: GAL-GC2 × 1 GAL=Beta-D-Galactose, GC2=6-Acetamido-6-Deoxy-Castanospermine. PDB code: 5bxs(A).
		3. Ligand: GAL-LOG × 1 GAL=Beta-D-Galactose, LOG=Lognac. PDB code: 5bxp(A).
		4. Ligand: GAL-NGT × 1 GAL=Beta-D-Galactose, NGT=3ar,5r,6s,7r,7ar-5-Hydroxymethyl-2-Methyl-5,6,7,7a- Tetrahydro-3ah-Pyrano[3,2-D]thiazole-6,7-Diol. PDB code: 4jaw(A).
		5. Ligand: GAL-NOK × 1 GAL=Beta-D-Galactose, NOK=2-Acetamido-1,2-Dideoxynojirmycin. PDB code: 5bxr(A).
		6. Ligand: NAG-GAL × 1 NAG=N-Acetyl-D-Glucosamine, GAL=Beta-D-Galactose. PDB code: 4h04(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 4h04(A), 4jaw(A), 5bxt(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 4 Sulfate ion PDB codes: 4h04(A), 4jaw(A), 5bxp(A), 5bxr(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 4h04(A), 4jaw(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 5 Sulfate ion PDB codes: 4h04(A), 4jaw(A), 5bxp(A), 5bxr(A), 5bxt(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 3 Sulfate ion PDB codes: 5bxp(A), 5bxr(A), 5bxs(A).