Ligand clusters for UniProt code A5GZW8

Ligand clusters for A5GZW8: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Sus scrofa GN=SDHD PE=1 SV=2

		3 ligand clusters Cluster 1. 21 ligand types 44 ligands Cluster 2. 2 ligand types 16 ligands Cluster 3. 1 ligand type 1 ligand
Representative protein: 1zoyD

Structures

PDB		Schematic diagram
1zoyD
3ae5D
3aeeD
4yxdD
3ae8D
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Cluster 1 contains 21 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: HEM × 23 Protoporphyrin IX containing fe PDB codes: 1zoy(D), 1zp0(D), 3abv(D), 3ae1(D), 3ae2(D), 3ae3(D), 3ae4(D), 3ae5(D), 3ae6(D), 3ae7(D), 3ae8(D), 3ae9(D), 3aea(D), 3aeb(D), 3aec(D), 3aed(D), 3aee(D), 3aef(D), 3aeg(D), 3sfd(D), 3sfe(D), 4ytp(D), 4yxd(D).
		2. Ligand: FTN × 2 N-[3-(1-Methylethoxy)phenyl]-2-(Trifluoromethyl) benzamide PDB codes: 3ae8(D), 4yxd(D).
		3. Ligand: 11J × 1 N-Biphenyl-3-Yl-2-Iodobenzamide PDB code: 3aeg(D).
		4. Ligand: 12J × 1 2-Iodo-N-[3-(1-Methylethoxy)phenyl]benzamide PDB code: 3ae7(D).
		5. Ligand: AT5 × 1 3-[(2s,4s,5r)-5,6-Dichloro-2,4-Dimethyl-1-Oxohexyl]-4- Hydroxy-5,6-Dimethoxy-2(1h)-Pyridinone PDB code: 3aee(D).
		6. Ligand: BOL × 1 2-Iodo-N-Phenylbenzamide PDB code: 3aed(D).
		7. Ligand: E23 × 1 N-(4-Tert-Butylbenzyl)-2-(Trifluoromethyl)benzamide PDB code: 4ytp(D).
		8. Ligand: EBM × 1 2-Iodo-N-(1-Methylethyl)benzamide PDB code: 3aec(D).
		9. Ligand: F6A × 1 N-Biphenyl-3-Yl-2-(Trifluoromethyl)benzamide PDB code: 3abv(D).
		10. Ligand: F7A × 1 N-(3-Phenoxyphenyl)-2-(Trifluoromethyl)benzamide PDB code: 3aeb(D).
		11. Ligand: F9A × 1 N-{3-[(Dimethylamino)methyl]phenyl}-2- (Trifluoromethyl)benzamide PDB code: 3aea(D).
		12. Ligand: FD8 × 1 N-[3-(Pentafluorophenoxy)phenyl]-2-(Trifluoromethyl) benzamide PDB code: 3ae9(D).
		13. Ligand: JMP × 1 2-{[3-(1-Methylethoxy)phenyl]carbamoyl}benzoic acid PDB code: 3ae6(D).
		14. Ligand: MRN × 1 2-Methyl-N-[3-(1-Methylethoxy)phenyl]benzamide PDB code: 3ae5(D).
		15. Ligand: N1M × 1 2-Iodo-N-Methylbenzamide PDB code: 3ae4(D).
		16. Ligand: NBI × 1 2-Nitro-N-Phenylbenzamide PDB code: 3ae3(D).
		17. Ligand: PCI × 1 Pentachlorophenol PDB code: 3sfd(D).
		18. Ligand: SLI × 1 2-Hydroxy-N-Phenylbenzamide PDB code: 3ae2(D).
		19. Ligand: TFZ × 1 N-Phenyl-2-(Trifluoromethyl)benzamide PDB code: 3ae1(D).
		20. Ligand: TTF × 1 4,4,4-Trifluoro-1-Thien-2-Ylbutane-1,3-Dione PDB code: 1zp0(D).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: EPH × 15 L-Alpha-Phosphatidyl-Beta-Oleoyl-Gamma-Palmitoyl- Phosphatidylethanolamine PDB codes: 1zoy(D), 3abv(D), 3ae1(D), 3ae2(D), 3ae3(D), 3ae4(D), 3ae5(D), 3ae6(D), 3ae8(D), 3ae9(D), 3aea(D), 3aeb(D), 3aec(D), 3aed(D), 3aef(D).
		2. Ligand: TTF × 1 4,4,4-Trifluoro-1-Thien-2-Ylbutane-1,3-Dione PDB code: 1zp0(D).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: EPH × 1 L-Alpha-Phosphatidyl-Beta-Oleoyl-Gamma-Palmitoyl- Phosphatidylethanolamine PDB code: 1zoy(D).