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Ligand clusters for UniProt code A0A2D0TCB4

Ligand clusters for A0A2D0TCB4: Heterodisulfide reductase, subunit B from Methanothermococcus thermolithotrophicus DSM 2095

4 ligand clusters
Cluster 1.
4 ligand types
10 ligands
Cluster 2.
4 ligand types
9 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Representative protein: 5odcB  
JSmol
 

Structures

PDB   Schematic diagram
5odcB    
5odrB    
5odqB    
5odiB    
5odhB    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: COM × 3
coenzyme m
1-Thioethanesulfonic acid
PDB codes: 5odh(B), 5odi(B), 5odr(B).


 
2. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 5odc(B).


 
3. Ligand: 9S8 × 5
Non-Cubane [4fe-4s]-Cluster
PDB codes: 5odc(B), 5odh(B), 5odi(B), 5odq(B), 5odr(B).


 
4. Ligand: 9SB × 1
2-Bromanylethanesulfonic acid
PDB code: 5odq(B).

 

 Cluster 2 contains 4 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 5odh(B),


 
2. Ligand: 9S8 × 5
Non-Cubane [4fe-4s]-Cluster
PDB codes: 5odc(B), 5odh(B), 5odi(B), 5odq(B), 5odr(B).


 
3. Ligand: 9SB × 1
2-Bromanylethanesulfonic acid
PDB code: 5odq(B).


 
4. Ligand: SO4 × 1
Sulfate ion
PDB code: 5odr(B).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 5odc(B).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: ACT × 1
Acetate ion
PDB code: 5odc(B).

 

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