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Ligand clusters for UniProt code A0A0H3JPH0

Ligand clusters for A0A0H3JPH0: Capsular polysaccharide synthesis enzyme Cap8E from Staphylococcus aureus (strain Mu50 / ATCC 700699)

Top 6 (of 12) ligand clusters
Cluster 1.
3 ligand types
3 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3w1vA  
JSmol
 

Structures

PDB   Schematic diagram
3w1vA    
4g5hA    

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAP × 1
Nadp nicotinamide-Adenine-Dinucleotide phosphate
PDB code: 4g5h(A).


 
2. Ligand: UD7 × 1
[(2r,3r,4r,6r)-3-Acetamido-6-Methyl-4-Oxidanyl-5- Oxidanylidene-Oxan-2-Yl] [[(2r,3s,4r,5r)-5-[2,4-
Bis(oxidanylidene)pyrimidin-1-Yl]-3,4-Bis(oxidanyl) oxolan-2-Yl]methoxy-Oxidanyl-
Phosphoryl] hydrogen phosphate
PDB code: 4g5h(A).


 
3. Ligand: UDZ × 1
[(2r,3s,4r,5r,6r)-5-Acetamido-6-[[[(2r,3s,4r,5r)-5-[2, 4-Bis(oxidanylidene)pyrimidin-1-Yl]-3,4-
Bis(oxidanyl) oxolan-2-Yl]methoxy-Oxidanyl-Phosphoryl]oxy-Oxidanyl- Phosphoryl]oxy-3,4-
Bis(oxidanyl)oxan-2-Yl]methylimino- Azanylidene-Azanium
PDB code: 3w1v(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: UDZ × 1
[(2r,3s,4r,5r,6r)-5-Acetamido-6-[[[(2r,3s,4r,5r)-5-[2, 4-Bis(oxidanylidene)pyrimidin-1-Yl]-3,4-
Bis(oxidanyl) oxolan-2-Yl]methoxy-Oxidanyl-Phosphoryl]oxy-Oxidanyl- Phosphoryl]oxy-3,4-
Bis(oxidanyl)oxan-2-Yl]methylimino- Azanylidene-Azanium
PDB code: 3w1v(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: UD7 × 1
[(2r,3r,4r,6r)-3-Acetamido-6-Methyl-4-Oxidanyl-5- Oxidanylidene-Oxan-2-Yl] [[(2r,3s,4r,5r)-5-[2,4-
Bis(oxidanylidene)pyrimidin-1-Yl]-3,4-Bis(oxidanyl) oxolan-2-Yl]methoxy-Oxidanyl-
Phosphoryl] hydrogen phosphate
PDB code: 4g5h(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EPE × 1
4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid
PDB code: 3w1v(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3w1v(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 3w1v(A).

 

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