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PDBsum entry 5byt
Go to PDB code:
Ligand/metal interactions
PDB id
5byt
2 instances of ligand highlighted
PRP
Ligands
PRP
×2
PRP 402(A)
Metals
_MG
×2
MG 401(A)
Ligand
PRP
-
1-O-Pyrophosphono-5-O-Phosphono-Alpha-D-Ribofuranose
[Alpha-Phosphoribosylpyrophosphoric acid; 1-O-
Pyrophosphono-5-O-Phosphono-Alpha-D-Ribose; 1-O-
Pyrophosphono-5-O-Phosphono-D-Ribose; 1-O- Pyrophosphono-
5-O-Phosphono-Ribose]
Formula:
C
5
H
13
O
14
P
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PRP 402(A)
22
22
0
0
0
0
0
1
0
0
Advanced Analysis
Residue
Name Mismatches
Count
PRP 402(A)
O3P: O1P
|
O1P: O3P
|
O2A: O1A
|
O1A: O2A
|
O3B: O1B...
6
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's reactant diphosphate with similarity 40.91%
LIGPLOT
of interactions involving ligand PRP
List of
interactions
PRP 402(A)
(also representing equivalent ligand PRP 402(B) )
_MG
×2
