PDBsum entry 5byt Go to PDB code:  Tunnel analysis for: 5byt calculated with MOLE 2.0 PDB id 5byt Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 2.23 27.9 -0.67 -0.19 12.7 83 4 0 1 6 2 0 0  PRP 402 B 2 1.32 2.24 28.3 -0.84 -0.41 14.7 88 1 3 4 5 2 0 0  MG 401 B PRP 402 B 3 1.32 2.23 30.3 -0.44 -0.37 8.4 83 2 0 2 6 2 1 0  PRP 402 B 4 1.14 1.21 41.6 -0.83 -0.21 14.3 82 5 1 2 5 2 1 0  PRP 402 B 5 1.44 1.45 16.4 -0.41 -0.17 10.4 76 2 0 1 2 1 0 0   6 1.30 1.61 16.0 -0.75 -0.41 10.2 80 1 1 1 2 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.