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PDBsum entry 4j3u
Go to PDB code:
Ligand/metal interactions
PDB id
4j3u
2 instances of ligand highlighted
SGD-GLC-GLC-GLC-
GLC-GLC-GLC-GLC-
GLC
Ligands
SGD-GLC-GLC-GLC-
GLC-GLC-GLC-GLC-
GLC
×2
SGD 1(C) to GLC 9(C)
IOD
×32
IOD 928(A)
IOD 929(A)
Metals
_CL
×2
CL 932(A)
CL 924(B)
_CA
×4
CA 930(A)
CA 931(A)
Ligand
SGD-GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC
SGD
-
6-Thio-Alpha-D-Glucopyranose [6-Thio-Alpha-D-Glucose; 6-Thio-D-Glucose; 6-Thio- Glucose]
Formula:
C
6
H
12
O
5
S
GLC
-
Alpha-D-Glucopyranose [Alpha-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
SGD 1(C)
12
12
1
0
Complete
Chiral checks - OK
GLC 2(C)
12
12
1
0
Complete
Chiral checks - OK
GLC 3(C)
12
12
1
0
Complete
Chiral checks - OK
GLC 4(C)
12
12
1
0
Complete
Chiral checks - OK
GLC 5(C)
12
12
1
0
Complete
Chiral checks - OK
GLC 6(C)
12
12
1
0
Complete
Chiral checks - OK
GLC 7(C)
12
12
1
0
Complete
Chiral checks - OK
GLC 8(C)
12
12
1
1
Complete
Chiral checks - OK
GLC 9(C)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand SGD-GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC
List of
interactions
SGD 1(C) to GLC 9(C)
(also representing equivalent ligand SGD 1(D) to GLC 9(D) )
_CL
×2
_CA
×4
