PDBsum entry 4j3u Go to PDB code:  Tunnel analysis for: 4j3u calculated with MOLE 2.0 PDB id 4j3u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.33 25.5 -0.91 0.04 11.0 74 3 1 2 1 5 0 0   2 1.13 1.13 23.7 -0.52 -0.09 2.3 79 0 0 2 4 1 2 0   3 1.16 1.15 26.8 -0.44 -0.22 6.8 86 1 1 2 4 1 1 0  IOD 910 B 4 1.10 1.11 29.3 -0.38 -0.24 6.9 86 1 1 2 4 1 1 0  IOD 910 A 5 1.30 1.46 20.1 -1.67 -0.54 16.8 78 2 2 1 0 1 1 0   6 1.19 1.19 22.2 0.35 -0.13 5.0 79 2 0 2 5 1 1 0   7 1.39 1.58 15.5 -0.68 -0.17 22.6 85 4 2 0 3 0 0 0   8 1.53 1.83 15.1 -1.51 -0.38 20.2 75 1 2 0 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.