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PDBsum entry 1jtr
Go to PDB code:
Ligand/metal interactions
PDB id
1jtr
2 instances of ligand highlighted
GLU-GLN-TYR-LYS-
PHE-TYR-SER-VAL
Ligands
GLU-GLN-TYR-LYS-
PHE-TYR-SER-VAL
×2
GLU 1(P) to VAL 8(P)
NAG-NAG
×3
NAG 801(R) to NAG 802(R)
NAG 803(S) to NAG 804(S)
NAG 812(X) to NAG 813(X)
NAG-NAG-MAN
×3
NAG 805(T) to MAN 807(T)
NAG 809(U) to MAN 811(U)
NAG 814(W) to MAN 816(W)
NAG
NAG 808(B)
GOL
×3
GOL 901
GOL 902
GOL 903
ACY
ACY 1001
Ligand
GLU-GLN-TYR-LYS-PHE-TYR-SER-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLU 1(P)
10
10
1
1
Complete
Chiral checks - OK
GLN 2(P)
10
10
1
1
Complete
Chiral checks - OK
TYR 3(P)
13
13
1
1
Complete
Chiral checks - OK
LYS 4(P)
10
10
1
1
Complete
Chiral checks - OK
PHE 5(P)
12
12
1
1
Complete
Chiral checks - OK
TYR 6(P)
13
13
1
1
Complete
Chiral checks - OK
SER 7(P)
7
7
1
1
Complete
Chiral checks - OK
VAL 8(P)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GLU 1(P)
-
0
GLN 2(P)
O: OXT
1
TYR 3(P)
-
0
LYS 4(P)
-
0
PHE 5(P)
O: OXT
1
TYR 6(P)
-
0
SER 7(P)
-
0
VAL 8(P)
-
0
Additional Information
Obsolete entries are not available in the
Validator
DB
.
Validation carried out using
MotiveValidator
.
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LIGPLOT
of interactions involving ligand GLU-GLN-TYR-LYS-PHE-TYR-SER-VAL
List of
interactions
GLU 1(P) to VAL 8(P)
(also representing equivalent ligand GLU 1(Q) to VAL 8(Q) )
