PDBsum entry 1jtr Go to PDB code:  Tunnel analysis for: 1jtr calculated with MOLE 2.0 PDB id 1jtr Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.29 38.2 1.26 0.52 2.1 66 1 0 3 6 7 0 0   2 1.30 1.28 53.8 0.68 0.29 6.4 71 3 1 5 7 6 0 0   3 1.55 1.88 22.6 0.54 0.38 8.6 78 2 0 0 5 4 1 0   4 1.33 1.44 17.0 0.59 -0.18 3.6 92 1 1 2 4 0 0 2   5 1.32 1.48 19.4 -0.88 0.14 11.6 75 2 1 2 2 2 1 0   6 1.14 2.87 16.5 1.36 0.57 3.8 76 1 0 0 4 2 1 0   7 1.20 1.20 16.2 1.49 0.52 3.4 74 1 0 0 4 2 0 1   8 1.18 1.43 19.3 0.93 0.25 5.1 72 0 2 1 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.