PDBsum entry 8kcc

Structural protein

PDB id: 8kcc

Contents

Protein chains

102 a.a.

95 a.a.

98 a.a.

80 a.a.

90 a.a.

508 a.a.

DNA/RNA

Ligands

ADP

BEF

PDB id:

8kcc

Name:

Structural protein

Title:

Complex of ddm1-nucleosome(h2a.W) complex with ddm1 bound to shl2

Structure:

Probable histone h2a.7. Chain: a, b. Synonym: hta6. Engineered: yes. Histone h2b.10. Chain: c, d. Synonym: htb2. Engineered: yes. Histone h3.1.

Source:

Arabidopsis thaliana. Thale cress. Organism_taxid: 3702. Gene: at5g59870, mmn10.22, mmn10_90. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: at5g22880, mrn17.11. Gene: htr2, at1g09200, t12m4.9, htr3, at3g27360, k1g2.8, htr13, at5g10390, f12b17_260, htr9, at5g10400, f12b17_250, htr1, at5g65360,

Authors:

H.Zhang,Y.Zhang

Key ref:

H.Zhang et al. Mechanism of heterochromatin remodeling revealed by t bound nucleosome structures.. Structure, . PubMed id: 38870940

Date:

07-Aug-23 Release date: 26-Jun-24

Protein chains

Q9FJE8  (H2A7_ARATH) -  Probable histone H2A.7 from Arabidopsis thaliana

Seq: 150 a.a.

Struc: 102 a.a.

Protein chains

Q9FFC0  (H2B10_ARATH) -  Histone H2B.10 from Arabidopsis thaliana

Seq: 145 a.a.

Struc: 95 a.a.

Protein chains

P59226  (H32_ARATH) -  Histone H3.1 from Arabidopsis thaliana

Seq: 136 a.a.

Struc: 98 a.a.

Protein chain

P59259  (H4_ARATH) -  Histone H4 from Arabidopsis thaliana

Seq: 103 a.a.

Struc: 80 a.a.

Protein chain

P59259  (H4_ARATH) -  Histone H4 from Arabidopsis thaliana

Seq: 103 a.a.

Struc: 90 a.a.

Protein chain

Q9XFH4  (DDM1_ARATH) -  ATP-dependent DNA helicase DDM1 from Arabidopsis thaliana

Seq: 764 a.a.

Struc: 508 a.a.

DNA/RNA chains

A-T-C-C-T-G-G-A-G-A-A-T-C-C-C-G-G-T-G-C-C-G-A-G-G-C-C-G-C-T-C-A-A-T-T-G-G-T-C- 150 bases

A-C-A-G-G-A-T-G-T-A-T-A-T-A-T-G-T-G-A-C-A-C-G-T-G-C-C-T-G-G-A-G-A-C-T-A-G-G-G- 150 bases

Enzyme reactions

• Enzyme class: Chain K: E.C.3.6.4.12 - Dna helicase.
• Reaction: ATP + H2O = ADP + phosphate + H⁺

ATP + H2O = ADP (Bound ligand (Het Group name = ADP) corresponds exactly) + phosphate + H(+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site