spacer
spacer

PDBsum entry 8kcc
Go to PDB code: 
Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 8kcc calculated with MOLE 2.0 PDB id
8kcc
Pores calculated on whole structure Pores calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
18 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.23 4.23 26.8 -1.26 -0.70 14.7 72 3 0 0 0 0 0 0  DA 11 I DT 12 I DC 13 I DC 14 I DC 15 I DG 16 I D
A 59 J DA 60 J DG 131 J DC 132 J DC 134 J DC 135 J
2 1.58 1.58 30.6 -1.71 -0.57 16.1 74 2 0 0 0 0 1 0  DG 70 I DT 71 I DA 72 I DC 73 I DG 74 I DC 75 I
DG 76 I DC 77 I DT 148 I DG 149 I DT 79 J DA 80 J
DC 81 J DG 82 J
3 1.63 1.84 32.2 -1.59 -0.53 13.6 70 4 0 0 0 0 3 0  DG 70 I DT 71 I DA 72 I DC 73 I DC 146 I DC 147 I
DT 148 I DG 149 I DC 81 J DG 82 J
4 2.02 2.02 44.9 -1.37 -0.68 15.9 82 6 0 1 1 0 0 0  DT 90 I DT 91 I DT 92 I DA 93 I DC 54 J DA 62 J
DC 63 J DG 64 J
5 3.17 3.32 59.5 -0.98 -0.41 17.0 83 6 0 3 3 1 1 0  DA 42 I DA 52 I DT 118 I DC 119 I DA 127 I DC 128
I DA 19 J DG 29 J DC 93 J DG 103 J DC 104 J
6 3.05 3.04 61.6 -1.87 -0.59 20.4 77 7 0 1 1 0 1 0  DA 11 I DT 12 I DC 13 I DC 14 I DC 77 I DA 59 J D
A 60 J DG 70 J DC 134 J DC 135 J DC 142 J DT 143
J DC 144 J
7 1.98 1.97 66.9 -1.33 -0.60 14.5 76 5 1 1 1 1 1 0  DA 11 I DC 87 I DG 88 I DT 89 I DT 90 I DT 91 I
DT 92 I DA 59 J DA 60 J DA 62 J DC 63 J DG 64 J
8 2.68 2.70 81.6 -1.67 -0.59 20.4 80 11 1 3 1 0 0 0  DC 13 I DC 14 I DC 15 I DG 16 I DG 22 I DT 91 I
DT 92 I DA 93 I DC 96 I DG 97 I DC 98 I DT 50 J
DT 51 J DG 53 J DC 54 J DG 56 J DG 131 J DC 132 J
DA 133 J DC 134 J DC 135 J
9 2.74 2.76 82.5 -1.48 -0.64 18.0 81 9 1 3 1 0 0 0  DA 11 I DT 12 I DG 22 I DG 88 I DT 91 I DT 92 I D
A 93 I DC 96 I DG 97 I DC 98 I DT 50 J DT 51 J DG
53 J DC 54 J DG 56 J DA 59 J DA 60 J DC 134 J DC
135 J
10 1.79 1.92 84.2 -1.54 -0.47 17.9 73 7 1 1 2 1 2 0  DA 63 I DA 64 I DC 65 I DG 66 I DC 67 I DC 73 I D
A 136 I DT 137 I DA 138 I DT 139 I DT 145 I DC
146 I DT 9 J DA 10 J DT 11 J DA 80 J DC 81 J DG
82 J DT 83 J DC 85 J
11 1.80 1.94 84.3 -1.54 -0.52 18.7 78 7 1 2 2 0 2 0  DA 136 I DT 137 I DT 145 I DC 146 I DC 147 I DA
10 J DT 11 J DA 19 J DC 93 J DG 94 J
12 3.32 3.86 93.1 -1.36 -0.56 17.6 85 9 1 5 2 0 1 0  DA 11 I DT 12 I DG 22 I DA 32 I DC 96 I DA 106 I
DG 117 I DT 118 I DG 37 J DG 38 J DG 39 J DC 49 J
DA 59 J DA 60 J DC 114 J DC 115 J DC 134 J DC 135
J
13 1.78 1.92 95.8 -1.40 -0.47 15.9 73 6 1 1 2 1 2 0  DA 62 I DA 63 I DA 64 I DA 136 I DT 137 I DA 138
I DT 139 I DT 145 I DC 146 I DC 147 I DG 8 J DT 9
J DA 10 J DT 11 J DG 84 J DC 85 J DG 86 J
14 2.61 2.67 104.2 -1.24 -0.54 15.4 84 11 0 7 3 0 1 0  DG 22 I DA 32 I DT 91 I DT 92 I DA 93 I DC 96 I
DG 97 I DC 98 I DA 106 I DG 117 I DT 118 I DG 37
J DG 38 J DG 39 J DC 49 J DT 50 J DT 51 J DG 53 J
DC 54 J DG 56 J DC 114 J DC 115 J
15 3.09 3.27 113.2 -1.75 -0.60 18.3 82 17 1 6 2 0 1 0  DC 13 I DC 14 I DC 15 I DG 22 I DA 32 I DA 42 I
DC 96 I DA 106 I DG 117 I DT 118 I DC 119 I DG 29
J DG 39 J DC 49 J DC 114 J DC 132 J DA 133 J DC
134 J DC 135 J
16 1.94 1.98 136.8 -1.34 -0.60 14.4 81 17 0 7 4 0 1 0  DG 22 I DA 32 I DA 42 I DT 90 I DT 91 I DT 92 I D
A 93 I DC 96 I DG 97 I DC 98 I DA 106 I DG 117 I
DT 118 I DC 119 I DG 29 J DG 39 J DC 49 J DT 50 J
DT 51 J DG 53 J DC 54 J DA 62 J DC 63 J DG 64 J
DC 114 J
17 1.31 1.52 155.8 -0.44 -0.04 16.1 78 14 2 7 15 2 2 1  DT 91 I DT 92 I DA 93 I DC 96 I DG 97 I DC 98 I
DC 47 J DC 48 J DC 49 J DT 50 J DT 51 J DG 53 J
DC 54 J DG 56 J
18 1.48 1.69 162.4 -0.61 -0.13 17.3 77 14 3 5 14 2 2 1  DA 11 I DT 12 I DG 22 I DG 88 I DC 96 I DC 47 J
DC 48 J DC 49 J DT 50 J DA 59 J DA 60 J DC 134 J
DC 135 J
19 1.28 1.51 180.1 -0.40 -0.12 15.5 77 14 2 6 16 2 3 1  DG 22 I DA 32 I DA 106 I DG 117 I DT 118 I DG 37
J DG 38 J DG 39 J DC 47 J DC 48 J DC 49 J DC 114
J DC 115 J DG 124 J DG 125 J DC 126 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer