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PDBsum entry 6cod

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protein ligands metals Protein-protein interface(s) links
Lyase PDB id
6cod

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
259 a.a.
Ligands
GOL ×2
HBX ×2
Metals
_CL ×2
Waters ×286
PDB id:
6cod
Name: Lyase
Title: Athnl enantioselectivity mutant at-a9-h7 apo y13c,y121l,p126f,l128w, c131t,f179l,a209i with benzaldehyde
Structure: Alpha-hydroxynitrile lyase. Chain: a, b. Fragment: athnl. Synonym: athnl,(r)-hydroxynitrile lyase,(r)-oxynitrilase, methylesterase 5,atmes5. Engineered: yes. Mutation: yes
Source: Arabidopsis thaliana. Mouse-ear cress. Organism_taxid: 3702. Gene: hnl, mes5, at5g10300, f18d22_70. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
1.80Å     R-factor:   0.152     R-free:   0.194
Authors: B.J.Jones,R.J.Kazlauskas,R.Desrouleaux
Key ref: B.J.Jones et al. Athnl enantioselectivity mutants. To be published, .
Date:
12-Mar-18     Release date:   20-Mar-19    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q9LFT6  (HNL_ARATH) -  Alpha-hydroxynitrile lyase from Arabidopsis thaliana
Seq:
Struc:
258 a.a.
259 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 6 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.4.1.2.10  - (R)-mandelonitrile lyase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: (R)-mandelonitrile = benzaldehyde + hydrogen cyanide
(R)-mandelonitrile
=
benzaldehyde
Bound ligand (Het Group name = HBX)
corresponds exactly
+ hydrogen cyanide
      Cofactor: Flavoprotein
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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