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PDBsum entry 5njh

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protein ligands metals Protein-protein interface(s) links
Structural protein PDB id
5njh

 

 

 

 

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Contents
Protein chains
435 a.a.
413 a.a.
121 a.a.
339 a.a.
Ligands
GTP ×2
GDP ×2
8Z8
ACP
Metals
_MG ×5
Waters ×361
PDB id:
5njh
Name: Structural protein
Title: Triazolopyrimidines stabilize microtubules by binding to the vinca inhibitor site of tubulin
Structure: Tubulin alpha-1b chain. Chain: a, c. Synonym: alpha-tubulin ubiquitous,tubulin k-alpha-1,tubulin alpha- ubiquitous chain. Tubulin beta-2b chain. Chain: b, d. Stathmin-4. Chain: e. Synonym: stathmin-like protein b3,rb3.
Source: Bos taurus. Bovine. Organism_taxid: 9913. Rattus norvegicus. Rat. Organism_taxid: 10116. Gene: stmn4. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.39Å     R-factor:   0.218     R-free:   0.237
Authors: A.Sharma,G.S.Calvo,A.E.Prota,J.F.Diaz,M.O.Steinmetz
Key ref: G.Sáez-Calvo et al. (2017). Triazolopyrimidines Are Microtubule-Stabilizing Agents that Bind the Vinca Inhibitor Site of Tubulin. Cell Chem Biol, 24, 737. PubMed id: 28579361 DOI: 10.1016/j.chembiol.2017.05.016
Date:
28-Mar-17     Release date:   21-Jun-17    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P81947  (TBA1B_BOVIN) -  Tubulin alpha-1B chain from Bos taurus
Seq:
Struc:
451 a.a.
435 a.a.
Protein chains
Pfam   ArchSchema ?
Q6B856  (TBB2B_BOVIN) -  Tubulin beta-2B chain from Bos taurus
Seq:
Struc:
445 a.a.
413 a.a.
Protein chain
Pfam   ArchSchema ?
P63043  (STMN4_RAT) -  Stathmin-4 from Rattus norvegicus
Seq:
Struc:
189 a.a.
121 a.a.
Protein chain
E1BQ43  (E1BQ43_CHICK) - 
Key:    PfamA domain  Secondary structure

 

 
DOI no: 10.1016/j.chembiol.2017.05.016 Cell Chem Biol 24:737 (2017)
PubMed id: 28579361  
 
 
Triazolopyrimidines Are Microtubule-Stabilizing Agents that Bind the Vinca Inhibitor Site of Tubulin.
G.Sáez-Calvo, A.Sharma, F.A.Balaguer, I.Barasoain, J.Rodríguez-Salarichs, N.Olieric, H.Muñoz-Hernández, M...Berbís, S.Wendeborn, M.A.Peñalva, R.Matesanz, ..Canales, A.E.Prota, J.Jímenez-Barbero, J.M.Andreu, C.Lamberth, M.O.Steinmetz, J.F.Díaz.
 
  ABSTRACT  
 
Microtubule-targeting agents (MTAs) are some of the clinically most successful anti-cancer drugs. Unfortunately, instances of multidrug resistances to MTA have been reported, which highlights the need for developing MTAs with different mechanistic properties. One less explored class of MTAs are [1,2,4]triazolo[1,5-a]pyrimidines (TPs). These cytotoxic compounds are microtubule-stabilizing agents that inexplicably bind to vinblastine binding site on tubulin, which is typically targeted by microtubule-destabilizing agents. Here we used cellular, biochemical, and structural biology approaches to address this apparent discrepancy. Our results establish TPs as vinca-site microtubule-stabilizing agents that promote longitudinal tubulin contacts in microtubules, in contrast to classical microtubule-stabilizing agents that primarily promote lateral contacts. Additionally we observe that TPs studied here are not affected by p-glycoprotein overexpression, and suggest that TPs are promising ligands against multidrug-resistant cancer cells.
 

 

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