PDBsum entry 5njh Go to PDB code:  Tunnel analysis for: 5njh calculated with MOLE 2.0 PDB id 5njh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.21 109.4 -0.67 -0.13 11.8 83 10 6 8 16 5 4 0  GTP 501 A 2 1.19 1.83 32.4 0.89 0.16 2.8 81 0 1 3 8 2 0 2   3 1.21 2.36 15.1 -0.32 -0.19 10.4 86 2 0 2 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.