PDBsum entry 5njh Go to PDB code:  Pore analysis for: 5njh calculated with MOLE 2.0 PDB id 5njh Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.46 1.46 31.0 -1.89 -0.33 21.8 84 3 2 4 2 1 0 0   2 1.47 1.47 35.0 -2.22 -0.57 26.6 75 3 2 1 1 1 2 0   3 1.33 1.45 38.4 -2.24 -0.52 25.9 77 7 3 1 1 1 3 0   4 2.67 2.79 39.3 -1.66 -0.52 21.5 85 7 5 3 4 0 2 0   5 2.47 2.86 41.0 -2.05 -0.47 26.7 85 7 6 2 3 1 1 0   6 1.53 1.53 47.0 -1.53 -0.46 15.7 77 7 3 3 2 2 4 0   7 1.23 1.61 66.9 -1.53 -0.18 24.9 81 9 6 3 7 1 2 0  MG 401 F ACP 402 F 8 1.24 1.61 83.9 -1.09 -0.08 20.5 83 7 5 5 7 2 1 0  MG 401 F ACP 402 F 9 2.06 2.31 100.3 -1.49 -0.47 19.7 84 6 5 4 3 2 1 0   10 1.42 1.59 159.5 -2.06 -0.59 22.7 83 10 13 12 8 5 2 0  GDP 501 B MG 502 B 8Z8 503 B 11 1.58 1.63 186.5 -1.93 -0.49 20.4 83 10 10 10 9 5 3 0  8Z8 503 B 12 2.20 4.56 29.0 -0.65 -0.11 16.0 77 2 3 2 4 2 0 0   13 1.48 1.67 29.6 -1.47 -0.48 17.7 88 1 3 5 4 0 1 0   14 1.90 2.68 54.9 -1.78 -0.67 17.1 89 2 5 4 3 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.