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PDBsum entry 5k5e

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protein ligands Protein-protein interface(s) links
Hydrolase PDB id
5k5e

 

 

 

 

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Contents
Protein chains
527 a.a.
Ligands
NAG-NAG ×3
NAG ×10
6QS ×2
EDO ×3
GOL ×2
Waters ×127
PDB id:
5k5e
Name: Hydrolase
Title: Discovery and structure-activity relationships of a highly selective butyrylcholinesterase inhibitor by structure-based virtual screening
Structure: Cholinesterase. Chain: a, b. Synonym: acylcholine acylhydrolase,butyrylcholine esterase,choline esterase ii,pseudocholinesterase. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: bche, che1. Expressed in: drosophila melanogaster. Expression_system_taxid: 7227. Expression_system_cell_line: s2.
Resolution:
2.80Å     R-factor:   0.175     R-free:   0.202
Authors: E.De La Mora,S.N.Dighe,G.S.Deora,B.P.Ross,F.Nachon,X.Brazzolotto
Key ref: S.N.Dighe et al. (2016). Discovery and Structure-Activity Relationships of a Highly Selective Butyrylcholinesterase Inhibitor by Structure-Based Virtual Screening. J Med Chem, 59, 7683-7689. PubMed id: 27405689 DOI: 10.1021/acs.jmedchem.6b00356
Date:
23-May-16     Release date:   27-Jul-16    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P06276  (CHLE_HUMAN) -  Cholinesterase from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
602 a.a.
527 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.3.1.1.8  - cholinesterase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: an acylcholine + H2O = a carboxylate + choline + H+
acylcholine
+ H2O
= carboxylate
+ choline
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1021/acs.jmedchem.6b00356 J Med Chem 59:7683-7689 (2016)
PubMed id: 27405689  
 
 
Discovery and Structure-Activity Relationships of a Highly Selective Butyrylcholinesterase Inhibitor by Structure-Based Virtual Screening.
S.N.Dighe, G.S.Deora, E.De la Mora, F.Nachon, S.Chan, M.O.Parat, X.Brazzolotto, B.P.Ross.
 
  ABSTRACT  
 
Structure-based virtual screening of two libraries containing 567 981 molecules was used to discover novel, selective BuChE inhibitors, which are potentially superior symptomatic treatments in late-stage Alzheimer's disease. Compound 16 was identified as a highly selective submicromolar inhibitor of BuChE (huBuChE IC50 = 0.443 μM) with high permeability in the PAMPA-BBB model. The X-ray crystal structure of huBuChE in complex with 16 revealed the atomic-level interactions and offers opportunities for further development of the series.
 

 

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