PDBsum entry 5k5e Go to PDB code:  Tunnel analysis for: 5k5e calculated with MOLE 2.0 PDB id 5k5e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 1.11 22.0 -0.53 -0.59 6.6 90 1 0 2 3 2 1 0   2 1.31 2.58 16.3 -0.50 0.31 5.6 74 1 0 3 4 3 0 0   3 1.31 2.77 16.6 -0.41 0.36 5.5 74 1 0 3 4 3 0 0   4 1.10 1.41 24.2 -0.88 -0.01 16.6 76 3 2 2 4 3 1 0   5 1.13 1.43 16.9 -1.90 -0.18 22.0 70 2 2 0 1 1 2 0   6 1.19 1.31 15.2 -1.13 -0.78 6.4 88 0 2 2 0 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.