PDBsum entry 5o7b

Hydrolase

PDB id: 5o7b

Contents

Protein chain

105 a.a.

Waters ×5

PDB id:

5o7b

Name:

Hydrolase

Title:

Crystal structure of the slr0328 tyrosine phosphatase wzb from synechocystis sp. Pcc 6803

Structure:

Putative low molecular weight protein-tyrosine-phosphatase slr0328. Chain: a. Engineered: yes

Source:

Synechocystis sp. (Strain pcc 6803 / kazusa). Organism_taxid: 1111708. Strain: pcc 6803 / kazusa. Gene: slr0328. Expressed in: escherichia coli. Expression_system_taxid: 1007065. Expression_system_variant: prep4.

Resolution:

2.28Å R-factor: 0.227 R-free: 0.253

Authors:

J.P.Leite,L.Gales

Key ref:

S.B.Pereira et al. (2019). The role of the tyrosine kinase Wzc (Sll0923) and the phosphatase Wzb (Slr0328) in the production of extracellular polymeric substances (EPS) by Synechocystis PCC 6803. Microbiologyopen, 8, e00753. PubMed id: 30675753 DOI: 10.1002/mbo3.753

Date:

08-Jun-17 Release date: 20-Jun-18

Protein chain

Q55535  (Y328_SYNY3) -  Putative low molecular weight protein-tyrosine-phosphatase slr0328 from Synechocystis sp. (strain PCC 6803 / Kazusa)

Seq: 157 a.a.

Struc: 105 a.a.*

* PDB and UniProt seqs differ at 2 residue positions (black crosses)

Enzyme reactions

• Enzyme class: E.C.3.1.3.48 - protein-tyrosine-phosphatase.
• Reaction: O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate

Molecule diagrams generated from .mol files obtained from the KEGG ftp site

Key reference

DOI no: 10.1002/mbo3.753

Microbiologyopen 8:e00753 (2019)

PubMed id: 30675753

The role of the tyrosine kinase Wzc (Sll0923) and the phosphatase Wzb (Slr0328) in the production of extracellular polymeric substances (EPS) by Synechocystis PCC 6803.

S.B.Pereira, M.Santos, J.P.Leite, C.Flores, C.Eisfeld, Z.Büttel, R.Mota, F.Rossi, R.De Philippis, L.Gales, J.H.Morais-Cabral, P.Tamagnini.

ABSTRACT

Many cyanobacteria produce extracellular polymeric substances (EPS) mainly composed of heteropolysaccharides with unique characteristics that make them suitable for biotechnological applications. However, manipulation/optimization of EPS biosynthesis/characteristics is hindered by a poor understanding of the production pathways and the differences between bacterial species. In this work, genes putatively related to different pathways of cyanobacterial EPS polymerization, assembly, and export were targeted for deletion or truncation in the unicellular Synechocystis sp. PCC 6803. No evident phenotypic changes were observed for some mutants in genes occurring in multiple copies in Synechocystis genome, namely ∆wzy (∆sll0737), ∆wzx (∆sll5049), ∆kpsM (∆slr2107), and ∆kpsM∆wzy (∆slr2107∆sll0737), strongly suggesting functional redundancy. In contrast, Δwzc (Δsll0923) and Δwzb (Δslr0328) influenced both the amount and composition of the EPS, establishing that Wzc participates in the production of capsular (CPS) and released (RPS) polysaccharides, and Wzb affects RPS production. The structure of Wzb was solved (2.28 Å), revealing structural differences relative to other phosphatases involved in EPS production and suggesting a different substrate recognition mechanism. In addition, Wzc showed the ATPase and autokinase activities typical of bacterial tyrosine kinases. Most importantly, Wzb was able to dephosphorylate Wzc in vitro, suggesting that tyrosine phosphorylation/dephosphorylation plays a role in cyanobacterial EPS production.