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PDBsum entry 2k4f
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Immune system, signaling protein
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PDB id
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2k4f
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Contents |
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* Residue conservation analysis
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DOI no:
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Cell
135:702-713
(2008)
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PubMed id:
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Regulation of T cell receptor activation by dynamic membrane binding of the CD3epsilon cytoplasmic tyrosine-based motif.
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C.Xu,
E.Gagnon,
M.E.Call,
J.R.Schnell,
C.D.Schwieters,
C.V.Carman,
J.J.Chou,
K.W.Wucherpfennig.
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ABSTRACT
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Many immune system receptors signal through cytoplasmic tyrosine-based motifs
(ITAMs), but how receptor ligation results in ITAM phosphorylation remains
unknown. Live-cell imaging studies showed a close interaction of the CD3epsilon
cytoplasmic domain of the T cell receptor (TCR) with the plasma membrane through
fluorescence resonance energy transfer between a C-terminal fluorescent protein
and a membrane fluorophore. Electrostatic interactions between basic CD3epsilon
residues and acidic phospholipids enriched in the inner leaflet of the plasma
membrane were required for binding. The nuclear magnetic resonance structure of
the lipid-bound state of this cytoplasmic domain revealed deep insertion of the
two key tyrosines into the hydrophobic core of the lipid bilayer. Receptor
ligation thus needs to result in unbinding of the CD3epsilon ITAM from the
membrane to render these tyrosines accessible to Src kinases. Sequestration of
key tyrosines into the lipid bilayer represents a previously unrecognized
mechanism for control of receptor activation.
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Selected figure(s)
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Figure 3.
Figure 3. The CD3 epsilon
Cytoplasmic Domain Is Bound to the Inner Leaflet of the Plasma
Membrane (A and C) The FRET efficiency was determined for
transfectants expressing the CD3 epsilon
WT or a CD3 epsilon
mutant cytoplasmic domain (Emut1+2) (10 cells/construct, error
bars indicate SEM) using the quenching approach, as in Figures
2C and 2E. R18-PB: R18 photobleached. (B and D) The donor
dequenching method was used to measure the FRET efficiency for
the same transfectants (20 cells shown here from one
experiment), as in Figures 2D and 2F.
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Figure 7.
Figure 7. Membrane Binding Renders the Tyrosines of CD3 epsilon
Inaccessible to Lck (A) Lipid binding prevents tyrosine
phosphorylation of CD3 epsilon
[CD]. The tyrosine residues of CD3 epsilon
[CD] were efficiently phosphorylated by Lck in an in vitro
kinase assay. Addition of POPG/DHPC bicelles but not control
POPC/DHPC bicelles prevented tyrosine phosphorylation. Western
blots were probed with a phospho-tyrosine antibody (biotinylated
P-Tyr-100 and streptavidin-horseradish peroxidase, SA-HRP) and a
CD3 epsilon
[CD] antibody (CD3 epsilon
m20 and anti-goat IgG-HRP). (B) Neither endogenous CD3 epsilon
nor the HA-KIR-CD3 epsilon
[CD]-TFP reporter protein are basally phosphorylated. HA-KIR-CD3
epsilon
[CD]-TFP transfected Jurkat cells were solubilized using 1% NP40
and proteins were immunoprecipitated with CD3ζ (6B10.2), CD3
epsilon
(UCHT1), HA (3F10), or FLAG (M2, isotype control) antibodies.
Phosphorylated and total proteins were detected with a
phospho-tyrosine antibody (biotinylated P-Tyr-100 and SA-HRP,
upper panel), a CD3 epsilon
[CD] antibody (CD3 epsilon
m20 and anti-goat IgG-HRP, which detects CD3 epsilon
and the reporter protein), or an antibody to the ζ chain
(anti-CD3ζ 6B10.2-HRP, lower panel). SDS-PAGE was performed
under nonreducing conditions.
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The above figures are
reprinted
from an Open Access publication published by Cell Press:
Cell
(2008,
135,
702-713)
copyright 2008.
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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X.Shi,
Y.Bi,
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Y.Bai,
J.Guo,
Y.Wang,
X.Chen,
B.Wu,
H.Sun,
W.Liu,
J.Wang,
and
C.Xu
(2013).
Ca2+ regulates T-cell receptor activation by modulating the charge property of lipids.
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Nature,
493,
111-115.
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J.R.James,
and
R.D.Vale
(2012).
Biophysical mechanism of T-cell receptor triggering in a reconstituted system.
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Nature,
487,
64-69.
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L.Balagopalan,
E.Sherman,
V.A.Barr,
and
L.E.Samelson
(2011).
Imaging techniques for assaying lymphocyte activation in action.
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Nat Rev Immunol,
11,
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M.L.Dustin,
and
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(2011).
New insights into the T cell synapse from single molecule techniques.
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Nat Rev Immunol,
11,
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M.Yabas,
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Y.Zhang,
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E.M.Kucharska,
J.Kofler,
G.C.Farell,
S.Bröer,
C.C.Goodnow,
and
A.Enders
(2011).
ATP11C is critical for the internalization of phosphatidylserine and differentiation of B lymphocytes.
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Nat Immunol,
12,
441-449.
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N.Jiang,
J.Huang,
L.J.Edwards,
B.Liu,
Y.Zhang,
C.D.Beal,
B.D.Evavold,
and
C.Zhu
(2011).
Two-stage cooperative T cell receptor-peptide major histocompatibility complex-CD8 trimolecular interactions amplify antigen discrimination.
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Immunity,
34,
13-23.
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P.A.van der Merwe,
and
O.Dushek
(2011).
Mechanisms for T cell receptor triggering.
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Nat Rev Immunol,
11,
47-55.
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S.J.Davis,
and
P.A.van der Merwe
(2011).
Lck and the nature of the T cell receptor trigger.
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Trends Immunol,
32,
1-5.
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A.B.Sigalov
(2010).
Protein intrinsic disorder and oligomericity in cell signaling.
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Mol Biosyst,
6,
451-461.
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A.B.Sigalov
(2010).
Unusual biophysics of immune signaling-related intrinsically disordered proteins.
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Self Nonself,
1,
271-281.
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A.B.Sigalov
(2010).
The SCHOOL of nature: II. Protein order, disorder and oligomericity in transmembrane signaling.
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Self Nonself,
1,
89.
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A.B.Sigalov
(2010).
Membrane binding of intrinsically disordered proteins: Critical importance of an appropriate membrane model.
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Self Nonself,
1,
129-132.
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A.K.Chakraborty,
and
J.Das
(2010).
Pairing computation with experimentation: a powerful coupling for understanding T cell signalling.
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Nat Rev Immunol,
10,
59-71.
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B.F.Lillemeier,
M.A.Mörtelmaier,
M.B.Forstner,
J.B.Huppa,
J.T.Groves,
and
M.M.Davis
(2010).
TCR and Lat are expressed on separate protein islands on T cell membranes and concatenate during activation.
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Nat Immunol,
11,
90-96.
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B.Treanor,
D.Depoil,
A.Gonzalez-Granja,
P.Barral,
M.Weber,
O.Dushek,
A.Bruckbauer,
and
F.D.Batista
(2010).
The membrane skeleton controls diffusion dynamics and signaling through the B cell receptor.
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Immunity,
32,
187-199.
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B.Treanor,
and
F.D.Batista
(2010).
Organisation and dynamics of antigen receptors: implications for lymphocyte signalling.
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Curr Opin Immunol,
22,
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D.G.Metcalf,
D.T.Moore,
Y.Wu,
J.M.Kielec,
K.Molnar,
K.G.Valentine,
A.J.Wand,
J.S.Bennett,
and
W.F.DeGrado
(2010).
NMR analysis of the alphaIIb beta3 cytoplasmic interaction suggests a mechanism for integrin regulation.
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Proc Natl Acad Sci U S A,
107,
22481-22486.
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PDB code:
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D.R.Fooksman,
and
M.L.Dustin
(2010).
Affinity measured by microcluster.
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J Exp Med,
207,
907-909.
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D.R.Fooksman,
S.Vardhana,
G.Vasiliver-Shamis,
J.Liese,
D.A.Blair,
J.Waite,
C.Sacristán,
G.D.Victora,
A.Zanin-Zhorov,
and
M.L.Dustin
(2010).
Functional anatomy of T cell activation and synapse formation.
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Annu Rev Immunol,
28,
79.
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E.Gagnon,
C.Xu,
W.Yang,
H.H.Chu,
M.E.Call,
J.J.Chou,
and
K.W.Wucherpfennig
(2010).
Response multilayered control of T cell receptor phosphorylation.
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Cell,
142,
669-671.
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F.D.Batista,
B.Treanor,
and
N.E.Harwood
(2010).
Visualizing a role for the actin cytoskeleton in the regulation of B-cell activation.
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Immunol Rev,
237,
191-204.
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H.Wang,
J.Holst,
S.R.Woo,
C.Guy,
M.Bettini,
Y.Wang,
A.Shafer,
M.Naramura,
M.Mingueneau,
L.L.Dragone,
S.M.Hayes,
B.Malissen,
H.Band,
and
D.A.Vignali
(2010).
Tonic ubiquitylation controls T-cell receptor:CD3 complex expression during T-cell development.
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EMBO J,
29,
1285-1298.
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K.Nika,
C.Soldani,
M.Salek,
W.Paster,
A.Gray,
R.Etzensperger,
L.Fugger,
P.Polzella,
V.Cerundolo,
O.Dushek,
T.Höfer,
A.Viola,
and
O.Acuto
(2010).
Constitutively active Lck kinase in T cells drives antigen receptor signal transduction.
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Immunity,
32,
766-777.
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K.W.Wucherpfennig,
E.Gagnon,
M.J.Call,
E.S.Huseby,
and
M.E.Call
(2010).
Structural biology of the T-cell receptor: insights into receptor assembly, ligand recognition, and initiation of signaling.
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Cold Spring Harb Perspect Biol,
2,
a005140.
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M.Artomov,
M.Kardar,
and
A.K.Chakraborty
(2010).
Only signaling modules that discriminate sharply between stimulatory and nonstimulatory inputs require basal signaling for fast cellular responses.
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J Chem Phys,
133,
105101.
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M.E.Call,
and
J.J.Chou
(2010).
A view into the blind spot: solution NMR provides new insights into signal transduction across the lipid bilayer.
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Structure,
18,
1559-1569.
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N.E.Harwood,
and
F.D.Batista
(2010).
Early events in B cell activation.
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Annu Rev Immunol,
28,
185-210.
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P.E.Love,
and
S.M.Hayes
(2010).
ITAM-mediated signaling by the T-cell antigen receptor.
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Cold Spring Harb Perspect Biol,
2,
a002485.
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R.A.Fernandes,
C.Yu,
A.M.Carmo,
E.J.Evans,
P.A.van der Merwe,
and
S.J.Davis
(2010).
What controls T cell receptor phosphorylation?
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Cell,
142,
668-669.
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S.Dong,
B.Corre,
K.Nika,
S.Pellegrini,
and
F.Michel
(2010).
T cell receptor signal initiation induced by low-grade stimulation requires the cooperation of LAT in human T cells.
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PLoS One,
5,
e15114.
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S.K.Pierce,
and
W.Liu
(2010).
The tipping points in the initiation of B cell signalling: how small changes make big differences.
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Nat Rev Immunol,
10,
767-777.
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Z.Ma,
and
T.H.Finkel
(2010).
T cell receptor triggering by force.
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Trends Immunol,
31,
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A.A.Schmaier,
Z.Zou,
A.Kazlauskas,
L.Emert-Sedlak,
K.P.Fong,
K.B.Neeves,
S.F.Maloney,
S.L.Diamond,
S.P.Kunapuli,
J.Ware,
L.F.Brass,
T.E.Smithgall,
K.Saksela,
and
M.L.Kahn
(2009).
Molecular priming of Lyn by GPVI enables an immune receptor to adopt a hemostatic role.
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Proc Natl Acad Sci U S A,
106,
21167-21172.
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A.B.Sigalov,
and
G.M.Hendricks
(2009).
Membrane binding mode of intrinsically disordered cytoplasmic domains of T cell receptor signaling subunits depends on lipid composition.
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Biochem Biophys Res Commun,
389,
388-393.
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C.S.Guy,
and
D.A.Vignali
(2009).
Organization of proximal signal initiation at the TCR:CD3 complex.
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Immunol Rev,
232,
7.
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J.E.Smith-Garvin,
G.A.Koretzky,
and
M.S.Jordan
(2009).
T cell activation.
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Annu Rev Immunol,
27,
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J.F.Brodeur,
S.Li,
O.Damlaj,
and
V.P.Dave
(2009).
Expression of fully assembled TCR-CD3 complex on double positive thymocytes: synergistic role for the PRS and ER retention motifs in the intra-cytoplasmic tail of CD3epsilon.
|
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Int Immunol,
21,
1317-1327.
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J.Wang,
R.M.Pielak,
M.A.McClintock,
and
J.J.Chou
(2009).
Solution structure and functional analysis of the influenza B proton channel.
|
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Nat Struct Mol Biol,
16,
1267-1271.
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PDB codes:
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K.Choudhuri,
M.Parker,
A.Milicic,
D.K.Cole,
M.K.Shaw,
A.K.Sewell,
G.Stewart-Jones,
T.Dong,
K.G.Gould,
and
P.A.van der Merwe
(2009).
Peptide-major histocompatibility complex dimensions control proximal kinase-phosphatase balance during T cell activation.
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J Biol Chem,
284,
26096-26105.
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L.Kurgan,
A.A.Razib,
S.Aghakhani,
S.Dick,
M.Mizianty,
and
S.Jahandideh
(2009).
CRYSTALP2: sequence-based protein crystallization propensity prediction.
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BMC Struct Biol,
9,
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L.M.Deford-Watts,
T.C.Tassin,
A.M.Becker,
J.J.Medeiros,
J.P.Albanesi,
P.E.Love,
C.Wülfing,
and
N.S.van Oers
(2009).
The cytoplasmic tail of the T cell receptor CD3 epsilon subunit contains a phospholipid-binding motif that regulates T cell functions.
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J Immunol,
183,
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M.L.Dustin
(2009).
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Immunity,
30,
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M.L.Dustin
(2009).
Supported bilayers at the vanguard of immune cell activation studies.
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J Struct Biol,
168,
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P.Tolar,
H.W.Sohn,
W.Liu,
and
S.K.Pierce
(2009).
The molecular assembly and organization of signaling active B-cell receptor oligomers.
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Immunol Rev,
232,
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P.Tolar,
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EMBO Rep,
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R.Wang,
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and
D.H.Margulies
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|
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J Immunol,
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PDB codes:
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T.E.Singleton,
B.Platzer,
E.Dehlink,
and
E.Fiebiger
(2009).
The first transmembrane region of the beta-chain stabilizes the tetrameric Fc epsilon RI complex.
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Mol Immunol,
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T.Harder,
and
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(2009).
Plasma membrane rafts engaged in T cell signalling: new developments in an old concept.
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Cell Commun Signal,
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T.Zech,
C.S.Ejsing,
K.Gaus,
B.de Wet,
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K.Simons,
and
T.Harder
(2009).
Accumulation of raft lipids in T-cell plasma membrane domains engaged in TCR signalling.
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EMBO J,
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V.P.Dave
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Immunol Rev,
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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