7sq1

Electron Microscopy
3.8Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero decamer (preferred)
PDBe Complex ID:
PDB-CPX-212185 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (8 distinct):
Transmembrane protein gp41 Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 153 amino acids
Theoretical weight: 17.13 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:
  • Canonical: Q2N0S6 (Residues: 509-661; Coverage: 18%)
Gene name: env
Sequence domains: Retroviral envelope protein
Envelope glycoprotein gp160 Chains: C, E, G
Molecule details ›
Chains: C, E, G
Length: 472 amino acids
Theoretical weight: 52.92 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:
  • Canonical: Q2N0S6 (Residues: 31-502; Coverage: 55%)
Gene name: env
Sequence domains: Envelope glycoprotein GP120
C05 Fab Light chain Chains: I, L
Molecule details ›
Chains: I, L
Length: 111 amino acids
Theoretical weight: 12.03 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
C05 Fab heavy chain Chains: A, H
Molecule details ›
Chains: A, H
Length: 122 amino acids
Theoretical weight: 13.73 KDa
Source organism: Mus musculus
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: BMA, MAN
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-25376
Expression system: Homo sapiens