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Crystal structure of vanillin bound to Co-LSD4 from Sphingobium sp. strain SYK-6

X-ray diffraction
1.651Å resolution
PDB entry 6xm9 coloured by chain, front view.
PDB entry 6xm9 coloured by chain, side view.
PDB entry 6xm9 coloured by chain, top view.
Source organism: Sphingobium sp. SYK-6
Assembly composition:
homo dimer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Dioxygenase
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Multimeric state: homo dimer
Accessible surface area: 34716.87 Å2
Buried surface area: 6287.59 Å2
Dissociation area: 1,019.78 Å2
Dissociation energy (ΔGdiss): -5.35 kcal/mol
Dissociation entropy (TΔSdiss): 14.5 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-124258

Macromolecules

Dioxygenase
Chain: A
Length: 489 amino acids
Theoretical weight: 54.97 KDa
Source organism: Sphingobium sp. SYK-6
Expression system: Escherichia coli
UniProt:
  • Canonical: G2IQT9 (Residues: 1-489; Coverage: 100%)
Gene name: SLG_12860
Pfam: Retinal pigment epithelial membrane protein
InterPro: Carotenoid oxygenase
Dioxygenase in PDB entry 6xm9, assembly 1, front view.
Dioxygenase in PDB entry 6xm9, assembly 1, side view.
Dioxygenase in PDB entry 6xm9, assembly 1, top view.
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