Structure analysis

Atomic structure of the Human Herpesvirus 6B Capsid and Capsid-Associated Tegument Complexes

Electron Microscopy
9Å resolution
Assembly composition:
hetero 3540-mer (preferred)
Entry contents: 5 distinct polypeptide molecules

Assemblies

Assembly 1 (preferred)
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Multimeric state: hetero 3540-mer
PDBe Complex ID: PDB-CPX-179367

Macromolecules

Chains: A, B, C, D, E, F, G, H, I, q, r, s, t, u, v, w
Length: 1345 amino acids
Theoretical weight: 152.26 KDa
Source organism: Human herpesvirus 6 strain Z29
UniProt:
  • Canonical: Q9QJ26 (Residues: 1-1345; Coverage: 100%)
Gene names: MCP, U57
Pfam: Herpes virus major capsid protein
InterPro:

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Chains: e, f, g, h, i, j, k, l, m, n, o, p
Length: 858 amino acids
Theoretical weight: 95.74 KDa
Source organism: Human herpesvirus 6 strain Z29
UniProt:
  • Canonical: Q69535 (Residues: 1-858; Coverage: 100%)
Gene name: U11
Pfam: Herpesvirus large structural phosphoprotein UL32
InterPro: Herpesvirus UL11/UL32

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Chains: 1, 2, 3, 4, J, K, L, M, N, O, P, Q, R, x, y, z
Length: 89 amino acids
Theoretical weight: 9.83 KDa
Source organism: Human herpesvirus 6 strain Z29
UniProt:
  • Canonical: Q9WT32 (Residues: 1-89; Coverage: 100%)
Gene names: SCP, U32
Pfam: Small capsid protein of Herpesviridae
InterPro: Small capsid protein, Herpesviridae

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Chains: 5, S, T, U, V
Length: 299 amino acids
Theoretical weight: 34.16 KDa
Source organism: Human herpesvirus 6 strain Z29
UniProt:
  • Canonical: Q9WT35 (Residues: 1-299; Coverage: 100%)
Gene names: TRX1, U29
Pfam: Herpesvirus capsid shell protein VP19C
InterPro: Herpesvirus capsid shell protein 1

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Chains: 6, 7, W, X, Y, Z, a, b, c, d
Length: 296 amino acids
Theoretical weight: 33.51 KDa
Source organism: Human herpesvirus 6 strain Z29
UniProt:
  • Canonical: Q9QJ27 (Residues: 1-296; Coverage: 100%)
Gene names: TRX2, U56
Pfam: Herpesvirus VP23 like capsid protein
InterPro: Herpesvirus capsid protein 2

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