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Crystal Structure of the CsiD Glutarate Hydroxylase in complex with N-Oxalylglycine

X-ray diffraction
2.2Å resolution
PDB entry 6gpn coloured by chain, front view.
PDB entry 6gpn coloured by chain, side view.
PDB entry 6gpn coloured by chain, top view.
Source organism: Escherichia coli K-12
Assembly composition:
homo tetramer (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Assembly Name: Glutarate 2-hydroxylase
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Multimeric state: homo tetramer
Accessible surface area: 48822.91 Å2
Buried surface area: 5828.85 Å2
Dissociation area: 2,608.83 Å2
Dissociation energy (ΔGdiss): -4.86 kcal/mol
Dissociation entropy (TΔSdiss): 41.5 kcal/mol
Symmetry number: 4
PDBe Complex ID: PDB-CPX-160113
Assembly 2 (preferred)
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Assembly Name: Glutarate 2-hydroxylase
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Multimeric state: homo tetramer
Accessible surface area: 48813.74 Å2
Buried surface area: 7855.22 Å2
Dissociation area: 2,697.39 Å2
Dissociation energy (ΔGdiss): -4.78 kcal/mol
Dissociation entropy (TΔSdiss): 41.65 kcal/mol
Symmetry number: 4
PDBe Complex ID: PDB-CPX-160113

Macromolecules

Glutarate 2-hydroxylase
Chains: A, B
Length: 353 amino acids
Theoretical weight: 40.65 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Best match: P76621 (Residues: 1-325)
Gene names: JW5427, b2659, csiD, gab, glaH, ygaT
Glutarate 2-hydroxylase in PDB entry 6gpn, assembly 2, front view.
Glutarate 2-hydroxylase in PDB entry 6gpn, assembly 2, side view.
Glutarate 2-hydroxylase in PDB entry 6gpn, assembly 2, top view.
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