› 6efz

X-ray diffraction
3.5Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194281 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Ig-like domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 302 amino acids
Theoretical weight: 34.11 KDa
Source organism: Drosophila melanogaster
Expression system: Homo sapiens
UniProt:
  • Canonical: Q9VMN6 (Residues: 128-423; Coverage: 49%)
Gene names: 31646, CG14008, CG14009, CG31646, CG31646-RA, CT33566, DIP-theta, Dmel\CG31646, Dmel_CG31646
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN, FUC
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, BMA, FUC
Carbohydrate polymer
3 bound ligands:
Ligand NAG 1 x NAG
Ligand ACT 2 x ACT
Ligand PEG 1 x PEG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: I212121
Unit cell:
a: 79.103Å b: 146.476Å c: 189.992Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.244 0.243 0.266
Expression system: Homo sapiens

Quick links

Citations

6 review citations

Adhesion Protein Structure, Molecular Affinities, and Principles of Cell-Cell Recognition.
Honig et al. (2020)
5 more

1 mention without citation

Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins.
Cosmanescu et al. (2018)