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Vps4p-Vta1p complex with peptide binding to the central pore of Vps4p

Electron Microscopy
3.2Å resolution
PDB entry 6bmf coloured by chain, front view.
PDB entry 6bmf coloured by chain, side view.
PDB entry 6bmf coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Assembly composition:
hetero hexamer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: DOA4-independent degradation protein 4 and Vacuolar protein sorting-associated protein 4
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Multimeric state: hetero hexamer
Accessible surface area: 61184.86 Å2
Buried surface area: 21772.18 Å2
Dissociation area: 1,059.96 Å2
Dissociation energy (ΔGdiss): 9.37 kcal/mol
Dissociation entropy (TΔSdiss): 7.28 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-153125

Macromolecules

Vacuolar protein sorting-associated protein 4
Chains: A, B, C, D, E
Length: 337 amino acids
Theoretical weight: 37.12 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P52917 (Residues: 101-437; Coverage: 77%)
Gene names: CSC1, DID6, END13, GRD13, P9705.10, VPL4, VPS4, VPT10, YPR173C
Pfam:
InterPro:
CATH: P-loop containing nucleotide triphosphate hydrolases
Vacuolar protein sorting-associated protein 4 in PDB entry 6bmf, assembly 1, front view.
Vacuolar protein sorting-associated protein 4 in PDB entry 6bmf, assembly 1, side view.
Vacuolar protein sorting-associated protein 4 in PDB entry 6bmf, assembly 1, top view.
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DOA4-independent degradation protein 4
Chain: G
Length: 10 amino acids
Theoretical weight: 954 Da
Source organism: Saccharomyces cerevisiae
Expression system: Not provided
UniProt:
  • Canonical: P36108 (Residues: 165-172; Coverage: 3%)
Gene names: CHM2, DID4, GRD7, REN1, VPL2, VPS2, VPT14, YKL002W
DOA4-independent degradation protein 4 in PDB entry 6bmf, assembly 1, front view.
DOA4-independent degradation protein 4 in PDB entry 6bmf, assembly 1, side view.
DOA4-independent degradation protein 4 in PDB entry 6bmf, assembly 1, top view.
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