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Crystal structure of PopP2 F318S in complex with IP6 and AcCoA

X-ray diffraction
2.53Å resolution
PDB entry 5w40 coloured by chain, front view.
PDB entry 5w40 coloured by chain, side view.
PDB entry 5w40 coloured by chain, top view.
Source organism: Ralstonia solanacearum
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: PopP2 protein
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Multimeric state: monomeric
Accessible surface area: 15014.08 Å2
Buried surface area: 1675.16 Å2
Dissociation area: 462.27 Å2
Dissociation energy (ΔGdiss): -4.12 kcal/mol
Dissociation entropy (TΔSdiss): 6.13 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-102703
Assembly 2
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Assembly Name: PopP2 protein
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Multimeric state: monomeric
Accessible surface area: 14598.97 Å2
Buried surface area: 1548.33 Å2
Dissociation area: 389.44 Å2
Dissociation energy (ΔGdiss): -1.78 kcal/mol
Dissociation entropy (TΔSdiss): 5.76 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-102703
Assembly 3
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Assembly Name: PopP2 protein
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Multimeric state: monomeric
Accessible surface area: 15045.57 Å2
Buried surface area: 1425.85 Å2
Dissociation area: 346.26 Å2
Dissociation energy (ΔGdiss): -3.45 kcal/mol
Dissociation entropy (TΔSdiss): 5.67 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-102703
Assembly 4
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Assembly Name: PopP2 protein
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Multimeric state: monomeric
Accessible surface area: 14393.58 Å2
Buried surface area: 1350.87 Å2
Dissociation area: 320.9 Å2
Dissociation energy (ΔGdiss): -0.98 kcal/mol
Dissociation entropy (TΔSdiss): 5.38 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-102703

Macromolecules

PopP2 protein
Chains: A, B, C, D
Length: 352 amino acids
Theoretical weight: 38.68 KDa
Source organism: Ralstonia solanacearum
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A0S4VB05 (Residues: 81-420; Coverage: 81%)
Gene names: RUN1985_v1_1190012, popp
Pfam: YopJ Serine/Threonine acetyltransferase
InterPro: Serine/Threonine acetyltransferase, YopJ
PopP2 protein in PDB entry 5w40, assembly 1, front view.
PopP2 protein in PDB entry 5w40, assembly 1, side view.
PopP2 protein in PDB entry 5w40, assembly 1, top view.
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