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X-ray structure of neuropilin-1 b1 domain complexed with Arg-4 ligand.

X-ray diffraction
1.6Å resolution
PDB entry 5iyy coloured by chain, front view.
PDB entry 5iyy coloured by chain, side view.
PDB entry 5iyy coloured by chain, top view.
Source organism: Homo sapiens
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Neuropilin-1
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Multimeric state: monomeric
Accessible surface area: 8016.44 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-127136
Assembly 2
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Assembly Name: Neuropilin-1
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Multimeric state: monomeric
Accessible surface area: 8280.51 Å2
Buried surface area: 0.0 Å2
Dissociation area: 0 Å2
Dissociation energy (ΔGdiss): 0 kcal/mol
Dissociation entropy (TΔSdiss): 0 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-127136

Macromolecules

Neuropilin-1
Chains: A, B
Length: 158 amino acids
Theoretical weight: 17.92 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O14786 (Residues: 273-427; Coverage: 17%)
Gene names: NRP, NRP1, VEGF165R
Pfam: F5/8 type C domain
InterPro:
CATH: Galactose-binding domain-like
Neuropilin-1 in PDB entry 5iyy, assembly 1, front view.
Neuropilin-1 in PDB entry 5iyy, assembly 1, side view.
Neuropilin-1 in PDB entry 5iyy, assembly 1, top view.
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