PDB 3t19 biological assemblies and structure analysis ‹ Protein Data Bank in Europe (PDBe)

Assemblies

Assembly 1 (preferred)

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Assembly Name: Protease
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Multimeric state: homo dimer

Accessible surface area: 43799.14 Å²

Buried surface area: 5455.62 Å²

Dissociation area: 2,727.81 Å²

Dissociation energy (ΔG^diss): 25.65 kcal/mol

Dissociation entropy (TΔS^diss): 15.02 kcal/mol

Symmetry number: 1

PDBe Complex ID: PDB-CPX-138017

$Homo dimeric assembly 1 of PDB entry 3t19 coloured by chemically distinct molecules, front view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>2 copies of Reverse transcriptase/ribonuclease H;</li> <li class='image_legend_li'>1 copy of 1-(2,5-dichloro-3-{[5-chloro-1-(2H-pyrazolo[3,4-b]pyridin-3-ylmethyl)-1H-benzotriazol-4-yl]oxy}phenyl)methanamine;</li> <li class='image_legend_li'>1 copy of water.</li></ul>}$

$Homo dimeric assembly 1 of PDB entry 3t19 coloured by chemically distinct molecules, side view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>2 copies of Reverse transcriptase/ribonuclease H;</li> <li class='image_legend_li'>1 copy of 1-(2,5-dichloro-3-{[5-chloro-1-(2H-pyrazolo[3,4-b]pyridin-3-ylmethyl)-1H-benzotriazol-4-yl]oxy}phenyl)methanamine;</li> <li class='image_legend_li'>1 copy of water.</li></ul>}$

$Homo dimeric assembly 1 of PDB entry 3t19 coloured by chemically distinct molecules, top view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>2 copies of Reverse transcriptase/ribonuclease H;</li> <li class='image_legend_li'>1 copy of 1-(2,5-dichloro-3-{[5-chloro-1-(2H-pyrazolo[3,4-b]pyridin-3-ylmethyl)-1H-benzotriazol-4-yl]oxy}phenyl)methanamine;</li> <li class='image_legend_li'>1 copy of water.</li></ul>}$

Assembly 2

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Assembly Name: Protease
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Multimeric state: homo tetramer

Accessible surface area: 82507.78 Å²

Buried surface area: 15991.94 Å²

Dissociation area: 2,553.92 Å²

Dissociation energy (ΔG^diss): 8.67 kcal/mol

Dissociation entropy (TΔS^diss): 16.9 kcal/mol

Symmetry number: 2

PDBe Complex ID: PDB-CPX-138023

$Homo tetrameric assembly 2 of PDB entry 3t19 coloured by chemically distinct molecules, front view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>4 copies of Reverse transcriptase/ribonuclease H;</li> <li class='image_legend_li'>2 copies of 1-(2,5-dichloro-3-{[5-chloro-1-(2H-pyrazolo[3,4-b]pyridin-3-ylmethyl)-1H-benzotriazol-4-yl]oxy}phenyl)methanamine;</li> <li class='image_legend_li'>2 copies of water.</li></ul>}$

$Homo tetrameric assembly 2 of PDB entry 3t19 coloured by chemically distinct molecules, side view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>4 copies of Reverse transcriptase/ribonuclease H;</li> <li class='image_legend_li'>2 copies of 1-(2,5-dichloro-3-{[5-chloro-1-(2H-pyrazolo[3,4-b]pyridin-3-ylmethyl)-1H-benzotriazol-4-yl]oxy}phenyl)methanamine;</li> <li class='image_legend_li'>2 copies of water.</li></ul>}$

$Homo tetrameric assembly 2 of PDB entry 3t19 coloured by chemically distinct molecules, top view. This structure contains: <ul class='image_legend_ul'><li class='image_legend_li'>4 copies of Reverse transcriptase/ribonuclease H;</li> <li class='image_legend_li'>2 copies of 1-(2,5-dichloro-3-{[5-chloro-1-(2H-pyrazolo[3,4-b]pyridin-3-ylmethyl)-1H-benzotriazol-4-yl]oxy}phenyl)methanamine;</li> <li class='image_legend_li'>2 copies of water.</li></ul>}$

Macromolecules

Reverse transcriptase/ribonuclease H

Chains: A, B
Length: 563 amino acids
Theoretical weight: 64.9 KDa
Source organism: HIV-1 M:B_HXB2R
Expression system: Escherichia coli
UniProt:

Best match: P04585 (Residues: 588-1147)

Gene name: gag-pol

Reverse transcriptase/ribonuclease H in PDB entry 3t19, assembly 1, front view.

Reverse transcriptase/ribonuclease H in PDB entry 3t19, assembly 1, side view.

Reverse transcriptase/ribonuclease H in PDB entry 3t19, assembly 1, top view.

FASTA Sequence


    >pdb|3t19|A B

MNSPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL

Molecule details ›

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FASTA (Protein chains A, B)
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Structure Factors
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Similar 3D structures (PDBeFold)
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Protein Data Bank in Europe

Crystal structure of HIV-1 reverse transcriptase (wild type) in complex with inhibitor M05

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Assemblies

Assembly 1 (preferred)

Assembly 2

Macromolecules

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PDBe › 3t19 › Structure analysis

Crystal structure of HIV-1 reverse transcriptase (wild type) in complex with inhibitor M05

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Assemblies

Assembly 1 (preferred)

Assembly 2

Macromolecules

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3t19 › Structure analysis