X-ray diffraction
2Å resolution

JC polyomavirus VP1 in complex with LSTc


Function and Biology Details

Structure analysis Details

Assemblies composition:
homo pentamer (preferred)
homo decamer
PDBe Complex ID:
PDB-CPX-136562 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Major capsid protein VP1 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 272 amino acids
Theoretical weight: 30.08 KDa
Source organism: JC polyomavirus
Expression system: Escherichia coli
  • Canonical: P03089 (Residues: 23-290; Coverage: 76%)
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

Carbohydrate polymer : NEW Components: BGC, GAL, NAG, SIA
2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: C2
Unit cell:
a: 149.67Å b: 96.34Å c: 128.22Å
α: 90° β: 110.28° γ: 90°
R R work R free
0.18 0.178 0.206
Expression system: Escherichia coli