› 5ndy

X-ray diffraction
1.95Å resolution

crystal structure of variants

Released:
DOI: 10.2210/pdb5ndy/pdb
PDB entry 5ndy coloured by chain, front view.
PDB entry 5ndy coloured by chain, side view.
PDB entry 5ndy coloured by chain, top view.
Source organism: Methanothermobacter thermautotrophicus str. Delta H
Entry authors: Linde M, Rajendran C, Babinger P, Sterner R

Function and Biology Details

Reaction catalysed: 
Geranylgeranyl diphosphate + sn-glycerol 1-phosphate = diphosphate + sn-3-O-(geranylgeranyl)glycerol 1-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-127845 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Geranylgeranylglyceryl phosphate synthase Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 256 amino acids
Theoretical weight: 27.68 KDa
Source organism: Methanothermobacter thermautotrophicus str. Delta H
Expression system: Escherichia coli
UniProt:
  • Canonical: O26652 (Residues: 1-245; Coverage: 100%)
Gene name: MTH_552
Sequence domains: PcrB family
Structure domains: FMN-linked oxidoreductases

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: C2
Unit cell:
a: 142.539Å b: 147.662Å c: 90.347Å
α: 90° β: 108.99° γ: 90°
R-values:
R R work R free
0.22 0.218 0.262
Expression system: Escherichia coli

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