› 1qnx

X-ray diffraction
1.9Å resolution

Ves v 5, an allergen from Vespula vulgaris venom

Released:
DOI: 10.2210/pdb1qnx/pdb
PDB entry 1qnx coloured by chain, front view.
PDB entry 1qnx coloured by chain, side view.
PDB entry 1qnx coloured by chain, top view.
Source organism: Vespula vulgaris
Primary publication:
Major venom allergen of yellow jackets, Ves v 5: structural characterization of a pathogenesis-related protein superfamily.
Henriksen A, King TP, Mirza O, Monsalve RI, Meno K, Ipsen H, Larsen JN, Gajhede M, Spangfort MD
Proteins 45 438-48 (2001)
PMID: 11746691

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170135 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Venom allergen 5 Chain: A
Molecule details ›
Chain: A
Length: 209 amino acids
Theoretical weight: 23.86 KDa
Source organism: Vespula vulgaris
Expression system: Escherichia coli
UniProt:
  • Canonical: Q05110 (Residues: 24-227; Coverage: 100%)
Sequence domains: Cysteine-rich secretory protein family
Structure domains: CAP

Ligands and Environments

1 bound ligand:
Ligand NA 1 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: MAX II BEAMLINE I711
Spacegroup: P212121
Unit cell:
a: 45.359Å b: 62.179Å c: 82.777Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.209 0.209 0.236
Expression system: Escherichia coli

Quick links

Citations

16 review citations

Diagnosis of Hymenoptera venom allergy.
Biló et al. (2005)
15 more

25 mentions without citation

Relevant B cell epitopes in allergic disease.
Pomés A. (2010)
24 more