Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : Z3P    

Bonds between two atoms of the molecule

Total Number of Bonds: 31


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O01 C02 O C doub 1.21 N N
2 C02 O03 C O sing 1.34 N N
3 C02 C04 C C sing 1.51 N N
4 C04 C05 C C sing 1.53 N N
5 C05 P06 C P sing 1.82 N N
6 P06 O07 P O doub 1.48 N N
7 P06 C08 P C sing 1.82 N N
8 P06 C13 P C sing 1.82 N N
9 C08 C09 C C sing 1.53 N N
10 C09 C10 C C sing 1.51 N N
11 C10 O11 C O doub 1.21 N N
12 C10 O12 C O sing 1.34 N N
13 C13 C14 C C sing 1.53 N N
14 C14 C15 C C sing 1.51 N N
15 C15 O16 C O doub 1.21 N N
16 C15 O17 C O sing 1.34 N N
17 O03 H1 O H sing 0.97 N N
18 C04 H041 C H sing 1.09 N N
19 C04 H042 C H sing 1.09 N N
20 C05 H051 C H sing 1.09 N N
21 C05 H052 C H sing 1.09 N N
22 C08 H081 C H sing 1.09 N N
23 C08 H082 C H sing 1.09 N N
24 C09 H091 C H sing 1.09 N N
25 C09 H092 C H sing 1.09 N N
26 O12 H3 O H sing 0.97 N N
27 C13 H131 C H sing 1.09 N N
28 C13 H132 C H sing 1.09 N N
29 C14 H141 C H sing 1.09 N N
30 C14 H142 C H sing 1.09 N N
31 O17 H4 O H sing 0.97 N N