data_Z3P
#
_chem_comp.id Z3P
_chem_comp.name "3,3',3''-phosphoryltripropanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H15 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-05-11
_chem_comp.pdbx_modified_date 2019-03-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 266.185
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Z3P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5JV9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z3P O01 O1 O 0 1 N N N N N N -10.235 -35.492 7.195 3.894 1.576 1.469 O01 Z3P 1
Z3P C02 C1 C 0 1 N N N N N N -10.645 -34.379 6.767 3.998 1.155 0.341 C02 Z3P 2
Z3P O03 O2 O 0 1 N N N N N N -11.145 -33.538 7.560 5.213 0.989 -0.205 O03 Z3P 3
Z3P C04 C2 C 0 1 N N N N N N -10.562 -34.049 5.281 2.763 0.811 -0.451 C04 Z3P 4
Z3P C05 C3 C 0 1 N N N N N N -11.310 -32.757 4.992 1.520 1.084 0.398 C05 Z3P 5
Z3P P06 P1 P 0 1 N N N N N N -11.258 -32.349 3.181 0.026 0.668 -0.560 P06 Z3P 6
Z3P O07 O3 O 0 1 N N N N N N -9.840 -32.305 2.633 0.039 1.407 -1.842 O07 Z3P 7
Z3P C08 C4 C 0 1 N N N N N N -12.123 -30.720 2.983 -0.002 -1.125 -0.893 C08 Z3P 8
Z3P C09 C5 C 0 1 N N N N N N -11.566 -29.671 3.928 -0.054 -1.889 0.431 C09 Z3P 9
Z3P C10 C6 C 0 1 N N N N N N -12.266 -28.321 3.758 -0.102 -3.369 0.156 C10 Z3P 10
Z3P O11 O4 O 0 1 N N N N N N -11.865 -27.341 4.433 -0.096 -3.772 -0.984 O11 Z3P 11
Z3P O12 O5 O 0 1 N N N N N N -13.228 -28.182 2.951 -0.152 -4.241 1.175 O12 Z3P 12
Z3P C13 C7 C 0 1 N N N N N N -12.276 -33.605 2.245 -1.457 1.132 0.394 C13 Z3P 13
Z3P C14 C8 C 0 1 N N N N N N -13.696 -33.688 2.806 -2.706 0.899 -0.459 C14 Z3P 14
Z3P C15 C9 C 0 1 N N N N N N -14.575 -34.787 2.200 -3.932 1.268 0.335 C15 Z3P 15
Z3P O16 O6 O 0 1 N N N N N N -14.054 -35.787 1.635 -3.819 1.676 1.467 O16 Z3P 16
Z3P O17 O7 O 0 1 N N N N N N -15.838 -34.701 2.284 -5.150 1.144 -0.215 O17 Z3P 17
Z3P H1 H1 H 0 1 N N N N N N -11.141 -33.892 8.441 5.975 1.220 0.343 H1 Z3P 18
Z3P H041 H2 H 0 0 N N N N N N -9.507 -33.931 4.992 2.728 1.421 -1.353 H041 Z3P 19
Z3P H042 H3 H 0 0 N N N N N N -11.012 -34.868 4.700 2.790 -0.243 -0.726 H042 Z3P 20
Z3P H051 H4 H 0 0 N N N N N N -12.358 -32.870 5.305 1.555 0.474 1.301 H051 Z3P 21
Z3P H052 H5 H 0 0 N N N N N N -10.845 -31.937 5.559 1.492 2.138 0.673 H052 Z3P 22
Z3P H081 H7 H 0 0 N N N N N N -11.994 -30.372 1.948 -0.882 -1.370 -1.488 H081 Z3P 23
Z3P H082 H8 H 0 0 N N N N N N -13.194 -30.857 3.194 0.897 -1.406 -1.440 H082 Z3P 24
Z3P H091 H9 H 0 0 N N N N N N -11.705 -30.016 4.963 0.835 -1.658 1.019 H091 Z3P 25
Z3P H092 H10 H 0 0 N N N N N N -10.493 -29.543 3.725 -0.944 -1.593 0.987 H092 Z3P 26
Z3P H3 H11 H 0 1 N N N N N N -13.534 -27.283 2.974 -0.182 -5.181 0.949 H3 Z3P 27
Z3P H131 H12 H 0 0 N N N N N N -12.324 -33.312 1.186 -1.514 0.522 1.296 H131 Z3P 28
Z3P H132 H13 H 0 0 N N N N N N -11.797 -34.592 2.331 -1.397 2.184 0.670 H132 Z3P 29
Z3P H141 H14 H 0 0 N N N N N N -13.624 -33.869 3.889 -2.654 1.516 -1.356 H141 Z3P 30
Z3P H142 H15 H 0 0 N N N N N N -14.189 -32.721 2.628 -2.760 -0.152 -0.744 H142 Z3P 31
Z3P H4 H16 H 0 1 N N N N N N -16.235 -35.462 1.877 -5.907 1.393 0.333 H4 Z3P 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z3P O01 C02 DOUB N N 1
Z3P C02 O03 SING N N 2
Z3P C02 C04 SING N N 3
Z3P C04 C05 SING N N 4
Z3P C05 P06 SING N N 5
Z3P P06 O07 DOUB N N 6
Z3P P06 C08 SING N N 7
Z3P P06 C13 SING N N 8
Z3P C08 C09 SING N N 9
Z3P C09 C10 SING N N 10
Z3P C10 O11 DOUB N N 11
Z3P C10 O12 SING N N 12
Z3P C13 C14 SING N N 13
Z3P C14 C15 SING N N 14
Z3P C15 O16 DOUB N N 15
Z3P C15 O17 SING N N 16
Z3P O03 H1 SING N N 17
Z3P C04 H041 SING N N 18
Z3P C04 H042 SING N N 19
Z3P C05 H051 SING N N 20
Z3P C05 H052 SING N N 21
Z3P C08 H081 SING N N 22
Z3P C08 H082 SING N N 23
Z3P C09 H091 SING N N 24
Z3P C09 H092 SING N N 25
Z3P O12 H3 SING N N 26
Z3P C13 H131 SING N N 27
Z3P C13 H132 SING N N 28
Z3P C14 H141 SING N N 29
Z3P C14 H142 SING N N 30
Z3P O17 H4 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z3P SMILES ACDLabs 12.01 O=C(O)CCP(=O)(CCC(=O)O)CCC(=O)O
Z3P InChI InChI 1.03 InChI=1S/C9H15O7P/c10-7(11)1-4-17(16,5-2-8(12)13)6-3-9(14)15/h1-6H2,(H,10,11)(H,12,13)(H,14,15)
Z3P InChIKey InChI 1.03 XJGZCDJZBUBTKW-UHFFFAOYSA-N
Z3P SMILES_CANONICAL CACTVS 3.385 OC(=O)CC[P](=O)(CCC(O)=O)CCC(O)=O
Z3P SMILES CACTVS 3.385 OC(=O)CC[P](=O)(CCC(O)=O)CCC(O)=O
Z3P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 C(CP(=O)(CCC(=O)O)CCC(=O)O)C(=O)O
Z3P SMILES "OpenEye OEToolkits" 2.0.4 C(CP(=O)(CCC(=O)O)CCC(=O)O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z3P "SYSTEMATIC NAME" ACDLabs 12.01 "3,3',3''-phosphoryltripropanoic acid"
Z3P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "3-[bis(3-hydroxy-3-oxopropyl)phosphoryl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z3P 'Create component' 2016-05-11 RCSB
Z3P 'Initial release' 2019-03-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Z3P O01 O 14.198 -1.876 1
Z3P C02 C 12.899 -1.126 2
Z3P O03 O 12.899 0.374 3
Z3P C04 C 11.600 -1.876 4
Z3P C05 C 10.301 -1.126 5
Z3P P06 P 9.002 -1.876 6
Z3P O07 O 9.752 -3.175 7
Z3P C08 C 7.702 -2.626 8
Z3P C09 C 6.404 -1.876 9
Z3P C10 C 5.104 -2.626 10
Z3P O11 O 3.805 -1.876 11
Z3P O12 O 5.104 -4.126 12
Z3P C13 C 8.252 -0.577 13
Z3P C14 C 9.002 0.722 14
Z3P C15 C 8.252 2.021 15
Z3P O16 O 9.002 3.320 16
Z3P O17 O 6.752 2.021 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Z3P O01 C02 DOUBLE NONE 1
Z3P C02 O03 SINGLE NONE 2
Z3P C02 C04 SINGLE NONE 3
Z3P C04 C05 SINGLE NONE 4
Z3P C05 P06 SINGLE NONE 5
Z3P P06 O07 DOUBLE NONE 6
Z3P P06 C08 SINGLE NONE 7
Z3P P06 C13 SINGLE NONE 8
Z3P C08 C09 SINGLE NONE 9
Z3P C09 C10 SINGLE NONE 10
Z3P C10 O11 DOUBLE NONE 11
Z3P C10 O12 SINGLE NONE 12
Z3P C13 C14 SINGLE NONE 13
Z3P C14 C15 SINGLE NONE 14
Z3P C15 O16 DOUBLE NONE 15
Z3P C15 O17 SINGLE NONE 16
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id Z3P
_pdbe_chem_comp_rdkit_properties.exactmw 266.056
_pdbe_chem_comp_rdkit_properties.amw 266.186
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 119.150
_pdbe_chem_comp_rdkit_properties.tpsa 128.970
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.774
_pdbe_chem_comp_rdkit_properties.CrippenMR 58.966
_pdbe_chem_comp_rdkit_properties.chi0v 8.699
_pdbe_chem_comp_rdkit_properties.chi1v 5.285
_pdbe_chem_comp_rdkit_properties.chi2v 2.226
_pdbe_chem_comp_rdkit_properties.chi3v 2.226
_pdbe_chem_comp_rdkit_properties.chi4v 1.371
_pdbe_chem_comp_rdkit_properties.chi0n 22.805
_pdbe_chem_comp_rdkit_properties.chi1n 10.803
_pdbe_chem_comp_rdkit_properties.chi2n 0.946
_pdbe_chem_comp_rdkit_properties.chi3n 0.946
_pdbe_chem_comp_rdkit_properties.chi4n 0.457
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.360
_pdbe_chem_comp_rdkit_properties.kappa1 3.816
_pdbe_chem_comp_rdkit_properties.kappa2 7.061
_pdbe_chem_comp_rdkit_properties.kappa3 8.448
_pdbe_chem_comp_rdkit_properties.Phi 1.585
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
Z3P UniChem ZINC ZINC000145743383
Z3P UniChem SureChEMBL SCHEMBL8531618
Z3P UniChem CCDC TOSCUC
Z3P UniChem PubChem 14816565
Z3P UniChem Nikkaji J600.835F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Z3P O01 -4.240 -2.058 -0.064 ETKDGv3 1
Z3P C02 -3.605 -1.848 -1.133 ETKDGv3 2
Z3P O03 -3.821 -2.660 -2.241 ETKDGv3 3
Z3P C04 -2.585 -0.756 -1.196 ETKDGv3 4
Z3P C05 -1.213 -1.286 -0.780 ETKDGv3 5
Z3P P06 0.067 0.005 -0.928 ETKDGv3 6
Z3P O07 0.176 0.422 -2.377 ETKDGv3 7
Z3P C08 1.656 -0.720 -0.401 ETKDGv3 8
Z3P C09 2.788 0.304 -0.485 ETKDGv3 9
Z3P C10 4.091 -0.329 -0.114 ETKDGv3 10
Z3P O11 4.468 -0.340 1.088 ETKDGv3 11
Z3P O12 4.864 -0.946 -1.093 ETKDGv3 12
Z3P C13 -0.355 1.472 0.075 ETKDGv3 13
Z3P C14 -0.481 1.119 1.557 ETKDGv3 14
Z3P C15 -0.819 2.338 2.354 ETKDGv3 15
Z3P O16 -2.024 2.649 2.553 ETKDGv3 16
Z3P O17 0.199 3.153 2.838 ETKDGv3 17
Z3P H1 -4.496 -3.415 -2.209 ETKDGv3 18
Z3P H041 -2.895 0.071 -0.522 ETKDGv3 19
Z3P H042 -2.540 -0.363 -2.235 ETKDGv3 20
Z3P H051 -1.247 -1.643 0.272 ETKDGv3 21
Z3P H052 -0.925 -2.139 -1.431 ETKDGv3 22
Z3P H081 1.880 -1.585 -1.061 ETKDGv3 23
Z3P H082 1.556 -1.091 0.642 ETKDGv3 24
Z3P H091 2.861 0.703 -1.520 ETKDGv3 25
Z3P H092 2.586 1.152 0.204 ETKDGv3 26
Z3P H3 5.742 -1.393 -0.855 ETKDGv3 27
Z3P H131 0.436 2.240 -0.066 ETKDGv3 28
Z3P H132 -1.312 1.895 -0.296 ETKDGv3 29
Z3P H141 0.477 0.701 1.931 ETKDGv3 30
Z3P H142 -1.276 0.356 1.701 ETKDGv3 31
Z3P H4 -0.013 3.991 3.366 ETKDGv3 32
#