Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YX6    

Bonds between two atoms of the molecule

Total Number of Bonds: 27


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C12 S13 C S sing 1.71 N Y
2 C12 C11 C C doub 1.35 N Y
3 S13 C14 S C sing 1.71 N Y
4 O01 C02 O C doub 1.22 N N
5 C11 C02 C C sing 1.47 N N
6 C11 N15 C N sing 1.34 N Y
7 C02 N03 C N sing 1.35 N N
8 C14 N15 C N doub 1.29 N Y
9 C10 N09 C N sing 1.46 N N
10 C10 C04 C C sing 1.53 N N
11 N09 C07 N C sing 1.33 N N
12 N03 C04 N C sing 1.47 N N
13 C04 C05 C C sing 1.53 N N
14 C07 O08 C O doub 1.21 N N
15 C07 C06 C C sing 1.5 N N
16 C05 C06 C C sing 1.53 N N
17 C10 H1 C H sing 1.09 N N
18 C10 H2 C H sing 1.09 N N
19 N03 H3 N H sing 0.97 N N
20 C04 H4 C H sing 1.09 N N
21 C05 H5 C H sing 1.09 N N
22 C05 H6 C H sing 1.09 N N
23 C06 H7 C H sing 1.09 N N
24 C06 H8 C H sing 1.09 N N
25 N09 H9 N H sing 0.97 N N
26 C12 H10 C H sing 1.08 N N
27 C14 H11 C H sing 1.08 N N