Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YX6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 26


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -2.076 0.649 -0.96
2 O01 O O1 N N N 0 0.543 1.523 0.772
3 C02 C C2 N N N 0 0.84 0.435 0.316
4 N03 N N1 N N N 0 -0.126 -0.457 0.02
5 C04 C C3 R N N 0 -1.533 -0.117 0.247
6 C05 C C4 N N N 0 -2.351 -1.401 0.422
7 C06 C C5 N N N 0 -3.773 -1.016 0.838
8 C07 C C6 N N N 0 -4.3 0.053 -0.075
9 O08 O O2 N N N 0 -5.497 0.246 -0.103
10 N09 N N2 N N N 0 -3.522 0.803 -0.858
11 C11 C C7 N Y N 0 2.253 0.093 0.088
12 C12 C C8 N Y N 0 3.273 0.936 0.367
13 S13 S S1 N Y N 0 4.747 0.172 -0.037
14 C14 C C9 N Y N 0 3.919 -1.229 -0.555
15 N15 N N3 N Y N 0 2.649 -1.082 -0.409
16 H1 H H1 N N N 0 -1.612 1.634 -1.0
17 H2 H H2 N N N 0 -1.836 0.103 -1.872
18 H3 H H3 N N N 0 0.11 -1.325 -0.344
19 H4 H H4 N N N 0 -1.62 0.5 1.141
20 H5 H H5 N N N 0 -2.38 -1.95 -0.519
21 H6 H H6 N N N 0 -1.899 -2.022 1.196
22 H7 H H7 N N N 0 -4.418 -1.893 0.778
23 H8 H H8 N N N 0 -3.763 -0.643 1.862
24 H9 H H9 N N N 0 -3.945 1.493 -1.392
25 H10 H H10 N N N 0 3.171 1.93 0.777
26 H11 H H11 N N N 0 4.395 -2.116 -0.946