Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YMM    

Bonds between two atoms of the molecule

Total Number of Bonds: 77


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C11 O C doub 1.21 N N
2 C11 N3 C N sing 1.34 N N
3 C11 C10 C C sing 1.51 N N
4 N3 C12 N C sing 1.47 N N
5 C9 C10 C C sing 1.53 N N
6 C9 C8 C C sing 1.53 N N
7 C10 C13 C C sing 1.55 N N
8 O3 C14 O C sing 1.43 N N
9 C14 C8 C C sing 1.53 N N
10 C12 C13 C C sing 1.54 N N
11 C8 N2 C N sing 1.46 N N
12 N2 C7 N C sing 1.35 N N
13 O1 C1 O C doub 1.22 N N
14 C7 C2 C C sing 1.51 N N
15 C7 O4 C O doub 1.21 N N
16 C5 C4 C C sing 1.53 N N
17 C2 N1 C N sing 1.47 N N
18 C2 C3 C C sing 1.53 N N
19 C1 N1 C N sing 1.35 N N
20 C1 O5 C O sing 1.35 N N
21 C22 C23 C C sing 1.53 N N
22 C22 C18 C C sing 1.53 N N
23 C15 C23 C C sing 1.53 N N
24 C15 O5 C O sing 1.45 N N
25 C15 C16 C C sing 1.53 N N
26 C19 C18 C C sing 1.53 N N
27 C19 C20 C C sing 1.53 N N
28 C17 C18 C C sing 1.53 N N
29 C17 C16 C C sing 1.53 N N
30 C3 C4 C C sing 1.53 N N
31 C4 C6 C C sing 1.53 N N
32 C21 C20 C C sing 1.53 N N
33 C10 H1 C H sing 1.09 N N
34 C12 H2 C H sing 1.09 N N
35 C12 H3 C H sing 1.09 N N
36 C13 H4 C H sing 1.09 N N
37 C13 H5 C H sing 1.09 N N
38 C14 S1 C S sing 1.81 N N
39 C14 H7 C H sing 1.09 N N
40 C15 H8 C H sing 1.09 N N
41 C16 H9 C H sing 1.09 N N
42 C16 H10 C H sing 1.09 N N
43 C17 H11 C H sing 1.09 N N
44 C17 H12 C H sing 1.09 N N
45 C18 H13 C H sing 1.09 N N
46 C19 H14 C H sing 1.09 N N
47 C19 H15 C H sing 1.09 N N
48 C2 H16 C H sing 1.09 N N
49 C20 H17 C H sing 1.09 N N
50 C20 H18 C H sing 1.09 N N
51 C21 H19 C H sing 1.09 N N
52 C21 H20 C H sing 1.09 N N
53 C21 H21 C H sing 1.09 N N
54 C22 H22 C H sing 1.09 N N
55 C22 H23 C H sing 1.09 N N
56 C23 H24 C H sing 1.09 N N
57 C23 H25 C H sing 1.09 N N
58 C3 H26 C H sing 1.09 N N
59 C3 H27 C H sing 1.09 N N
60 C4 H28 C H sing 1.09 N N
61 C5 H29 C H sing 1.09 N N
62 C5 H30 C H sing 1.09 N N
63 C5 H31 C H sing 1.09 N N
64 C6 H32 C H sing 1.09 N N
65 C6 H33 C H sing 1.09 N N
66 C6 H34 C H sing 1.09 N N
67 C8 H35 C H sing 1.09 N N
68 C9 H36 C H sing 1.09 N N
69 C9 H37 C H sing 1.09 N N
70 N1 H38 N H sing 0.97 N N
71 N2 H39 N H sing 0.97 N N
72 N3 H40 N H sing 0.97 N N
73 O3 H41 O H sing 0.97 N N
74 S1 O6 S O doub 1.42 N N
75 S1 O7 S O doub 1.42 N N
76 S1 O8 S O sing 1.52 N N
77 O8 H6 O H sing 0.97 N N