Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : YMM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 76


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 2.36 -0.007 0.238
2 C10 C C2 S N N 0 -4.285 2.264 -0.448
3 C11 C C3 N N N 0 -5.344 2.889 -1.329
4 C12 C C4 N N N 0 -4.597 4.585 0.071
5 C13 C C5 N N N 0 -4.125 3.265 0.72
6 C14 C C6 S N N 0 -4.185 -0.998 1.59
7 C15 C C7 N N N 0 4.72 0.318 0.383
8 C16 C C8 N N N 0 5.373 -0.986 -0.079
9 C17 C C9 N N N 0 6.71 -0.675 -0.756
10 C18 C C10 N N N 0 7.632 0.034 0.238
11 C19 C C11 N N N 0 8.968 0.345 -0.438
12 C2 C C12 S N N 0 -0.037 -0.307 -0.086
13 C20 C C13 N N N 0 9.934 0.94 0.589
14 C21 C C14 N N N 0 11.27 1.252 -0.088
15 C22 C C15 N N N 0 6.978 1.337 0.701
16 C23 C C16 N N N 0 5.642 1.026 1.377
17 C3 C C17 N N N 0 -0.171 -1.693 -0.72
18 C4 C C18 N N N 0 1.011 -1.942 -1.658
19 C5 C C19 N N N 0 0.944 -3.373 -2.196
20 C6 C C20 N N N 0 0.952 -0.955 -2.826
21 C7 C C21 N N N 0 -1.261 -0.012 0.741
22 C8 C C22 S N N 0 -3.667 0.299 0.965
23 C9 C C23 N N N 0 -4.753 0.904 0.073
24 N1 N N1 N N N 0 1.151 -0.276 0.771
25 N2 N N2 N N N 0 -2.477 0.012 0.161
26 N3 N N3 N N N 0 -5.502 4.186 -1.013
27 O1 O O1 N N N 0 2.463 0.213 -0.953
28 O2 O O2 N N N 0 -5.96 2.305 -2.195
29 O3 O O3 N N N 0 -5.41 -0.739 2.279
30 O4 O O4 N N N 0 -1.152 0.203 1.93
31 O5 O O5 N N N 0 3.451 0.022 1.025
32 H1 H H1 N N N 0 -3.347 2.161 -0.993
33 H2 H H2 N N N 0 -5.129 5.195 0.801
34 H3 H H3 N N N 0 -3.744 5.134 -0.329
35 H4 H H4 N N N 0 -4.766 2.991 1.559
36 H5 H H5 N N N 0 -3.083 3.335 1.034
37 S1 S S1 N N Y 0 -4.472 -2.226 0.285
38 H7 H H7 N N N 0 -3.447 -1.383 2.294
39 H8 H H8 N N N 0 4.549 0.964 -0.478
40 H9 H H9 N N N 0 5.544 -1.632 0.782
41 H10 H H10 N N N 0 4.716 -1.491 -0.788
42 H11 H H11 N N N 0 7.176 -1.603 -1.085
43 H12 H H12 N N N 0 6.539 -0.029 -1.617
44 H13 H H13 N N N 0 7.803 -0.612 1.099
45 H14 H H14 N N N 0 9.392 -0.572 -0.846
46 H15 H H15 N N N 0 8.809 1.061 -1.245
47 H16 H H16 N N N 0 0.061 0.443 -0.871
48 H17 H H17 N N N 0 9.51 1.858 0.997
49 H18 H H18 N N N 0 10.093 0.224 1.395
50 H19 H H19 N N N 0 11.958 1.676 0.644
51 H20 H H20 N N N 0 11.694 0.334 -0.495
52 H21 H H21 N N N 0 11.111 1.968 -0.894
53 H22 H H22 N N N 0 7.635 1.842 1.409
54 H23 H H23 N N N 0 6.808 1.984 -0.161
55 H24 H H24 N N N 0 5.176 1.955 1.707
56 H25 H H25 N N N 0 5.812 0.38 2.238
57 H26 H H26 N N N 0 -0.18 -2.452 0.063
58 H27 H H27 N N N 0 -1.101 -1.745 -1.286
59 H28 H H28 N N N 0 1.944 -1.803 -1.112
60 H29 H H29 N N N 0 0.011 -3.512 -2.742
61 H30 H H30 N N N 0 1.786 -3.55 -2.864
62 H31 H H31 N N N 0 0.986 -4.076 -1.364
63 H32 H H32 N N N 0 1.0 0.064 -2.443
64 H33 H H33 N N N 0 1.795 -1.133 -3.495
65 H34 H H34 N N N 0 0.019 -1.094 -3.373
66 H35 H H35 N N N 0 -3.411 1.005 1.755
67 H36 H H36 N N N 0 -5.669 1.031 0.65
68 H37 H H37 N N N 0 -4.943 0.238 -0.769
69 H38 H H38 N N N 0 1.068 -0.448 1.722
70 H39 H H39 N N N 0 -2.564 -0.16 -0.79
71 H40 H H40 N N N 0 -6.132 4.782 -1.447
72 H41 H H41 N N N 0 -6.114 -0.395 1.713
73 O6 O O6 N N Y 0 -5.489 -1.781 -0.603
74 O7 O O7 N N Y 0 -3.238 -2.728 -0.207
75 O8 O O8 N N Y 0 -5.098 -3.409 1.009
76 H6 H H6 N N Y 0 -5.311 -4.155 0.431