Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YJA    

Bonds between two atoms of the molecule

Total Number of Bonds: 70


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAK CBC C C sing 1.38 N Y
2 CAK CBD C C doub 1.39 N Y
3 CBC FAD C F sing 1.35 N N
4 CBC CAG C C doub 1.38 N Y
5 CAG CAE C C sing 1.38 N Y
6 CAE CAH C C doub 1.38 N Y
7 CAH CBD C C sing 1.39 N Y
8 CBD NAX C N sing 1.4 N N
9 NAX CBB N C sing 1.35 N N
10 CBB OAB C O doub 1.21 N N
11 CBB CAT C C sing 1.51 N N
12 CAT CBE C C sing 1.51 N N
13 CBE CAL C C sing 1.4 N Y
14 CBE NAZ C N doub 1.31 N Y
15 CAL CBG C C doub 1.36 N Y
16 NAZ NAW N N sing 1.4 N Y
17 NAW CBG N C sing 1.36 N Y
18 CBG NAY C N sing 1.39 N N
19 NAY C6 N C sing 1.38 N N
20 C6 N1 C N sing 1.33 N Y
21 C6 C5 C C doub 1.41 N Y
22 N1 C2 N C doub 1.32 N Y
23 C2 N3 C N sing 1.31 N Y
24 N3 C4 N C doub 1.34 N Y
25 C4 CAM C C sing 1.4 N Y
26 C4 C5 C C sing 1.42 N Y
27 CAM CBF C C doub 1.38 N Y
28 C5 CAJ C C sing 1.4 N Y
29 CAJ CAI C C doub 1.36 N Y
30 CAI CBF C C sing 1.4 N Y
31 CBF OBA C O sing 1.36 N N
32 OBA CAQ O C sing 1.43 N N
33 CAQ CAP C C sing 1.53 N N
34 CAP CAS C C sing 1.53 N N
35 CAS NBK C N sing 1.47 N N
36 NBK CAO N C sing 1.47 N N
37 NBK CAR N C sing 1.47 N N
38 CAO CAA C C sing 1.53 N N
39 CAR CAN C C sing 1.53 N N
40 CAN OAC C O sing 1.43 N N
41 CAK HAK C H sing 1.08 N N
42 CAG HAG C H sing 1.08 N N
43 CAE HAE C H sing 1.08 N N
44 CAH HAH C H sing 1.08 N N
45 NAX HAX N H sing 0.97 N N
46 CAT HAT1 C H sing 1.09 N N
47 CAT HAT2 C H sing 1.09 N N
48 CAL HAL C H sing 1.08 N N
49 NAW HAW N H sing 0.97 N N
50 NAY HAY N H sing 0.97 N N
51 C2 H2 C H sing 1.08 N N
52 CAM HAM C H sing 1.08 N N
53 CAJ HAJ C H sing 1.08 N N
54 CAI HAI C H sing 1.08 N N
55 CAQ HAQ1 C H sing 1.09 N N
56 CAQ HAQ2 C H sing 1.09 N N
57 CAP HAP1 C H sing 1.09 N N
58 CAP HAP2 C H sing 1.09 N N
59 CAS HAS1 C H sing 1.09 N N
60 CAS HAS2 C H sing 1.09 N N
61 CAO HAO1 C H sing 1.09 N N
62 CAO HAO2 C H sing 1.09 N N
63 CAR HAR1 C H sing 1.09 N N
64 CAR HAR2 C H sing 1.09 N N
65 CAA HAA1 C H sing 1.09 N N
66 CAA HAA2 C H sing 1.09 N N
67 CAA HAA3 C H sing 1.09 N N
68 CAN HAN1 C H sing 1.09 N N
69 CAN HAN2 C H sing 1.09 N N
70 OAC HAC O H sing 0.97 N N