Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : YJA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 67


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAK C CAK N Y N 0 -8.824 -1.197 -0.044
2 CBC C CBC N Y N 0 -9.794 -2.025 -0.581
3 FAD F FAD N N N 0 -9.862 -3.32 -0.201
4 CAG C CAG N Y N 0 -10.696 -1.527 -1.506
5 CAE C CAE N Y N 0 -10.628 -0.202 -1.896
6 CAH C CAH N Y N 0 -9.662 0.628 -1.365
7 CBD C CBD N Y N 0 -8.756 0.133 -0.435
8 NAX N NAX N N N 0 -7.777 0.973 0.106
9 CBB C CBB N N N 0 -6.563 0.478 0.421
10 OAB O OAB N N N 0 -6.291 -0.674 0.155
11 CAT C CAT N N N 0 -5.545 1.356 1.102
12 CBE C CBE N Y N 0 -4.283 0.568 1.341
13 CAL C CAL N Y N 0 -3.001 0.93 0.918
14 NAZ N NAZ N Y N 0 -4.2 -0.568 1.985
15 NAW N NAW N Y N 0 -2.86 -0.976 1.992
16 CBG C CBG N Y N 0 -2.136 -0.038 1.328
17 NAY N NAY N N N 0 -0.761 -0.061 1.109
18 C6 C C6 N Y N 0 -0.155 0.967 0.416
19 N1 N N1 N Y N 0 -0.866 1.986 -0.05
20 C2 C C2 N Y N 0 -0.298 2.978 -0.716
21 N3 N N3 N Y N 0 0.99 3.027 -0.961
22 C4 C C4 N Y N 0 1.802 2.047 -0.535
23 CAM C CAM N Y N 0 3.18 2.069 -0.781
24 C5 C C5 N Y N 0 1.241 0.965 0.188
25 CAJ C CAJ N Y N 0 2.067 -0.068 0.649
26 CAI C CAI N Y N 0 3.406 -0.022 0.403
27 CBF C CBF N Y N 0 3.966 1.035 -0.32
28 OBA O OBA N N N 0 5.304 1.052 -0.556
29 CAQ C CAQ N N N 0 6.065 -0.047 -0.053
30 CAP C CAP N N N 0 7.54 0.146 -0.414
31 CAS C CAS N N N 0 8.355 -1.031 0.125
32 NBK N NBK N N N 0 9.771 -0.845 -0.221
33 CAO C CAO N N N 0 9.971 -0.917 -1.675
34 CAA C CAA N N N 0 9.453 -2.259 -2.195
35 CAR C CAR N N N 0 10.616 -1.824 0.476
36 CAN C CAN N N N 0 12.075 -1.366 0.423
37 OAC O OAC N N N 0 12.222 -0.155 1.168
38 HAK H HAK N N N 0 -8.124 -1.585 0.681
39 HAG H HAG N N N 0 -11.453 -2.174 -1.924
40 HAE H HAE N N N 0 -11.333 0.184 -2.619
41 HAH H HAH N N N 0 -9.61 1.663 -1.671
42 HAX H HAX N N N 0 -7.971 1.911 0.255
43 HAT1 H HAT1 N N N 0 -5.323 2.214 0.468
44 HAT2 H HAT2 N N N 0 -5.944 1.702 2.056
45 HAL H HAL N N N 0 -2.743 1.82 0.363
46 HAW H HAW N N N 0 -2.511 -1.784 2.4
47 HAY H HAY N N N 0 -0.229 -0.8 1.444
48 H2 H H2 N N N 0 -0.922 3.783 -1.074
49 HAM H HAM N N N 0 3.623 2.888 -1.327
50 HAJ H HAJ N N N 0 1.644 -0.896 1.197
51 HAI H HAI N N N 0 4.041 -0.82 0.76
52 HAQ1 H HAQ1 N N N 0 5.96 -0.097 1.031
53 HAQ2 H HAQ2 N N N 0 5.701 -0.975 -0.496
54 HAP1 H HAP1 N N N 0 7.645 0.196 -1.497
55 HAP2 H HAP2 N N N 0 7.903 1.073 0.03
56 HAS1 H HAS1 N N N 0 8.25 -1.081 1.209
57 HAS2 H HAS2 N N N 0 7.991 -1.958 -0.318
58 HAO1 H HAO1 N N N 0 9.426 -0.105 -2.157
59 HAO2 H HAO2 N N N 0 11.033 -0.826 -1.9
60 HAR1 H HAR1 N N N 0 10.297 -1.904 1.515
61 HAR2 H HAR2 N N N 0 10.522 -2.795 -0.009
62 HAA1 H HAA1 N N N 0 8.372 -2.309 -2.061
63 HAA2 H HAA2 N N N 0 9.692 -2.355 -3.254
64 HAA3 H HAA3 N N N 0 9.925 -3.07 -1.641
65 HAN1 H HAN1 N N N 0 12.713 -2.137 0.854
66 HAN2 H HAN2 N N N 0 12.364 -1.193 -0.613
67 HAC H HAC N N N 0 13.123 0.194 1.178