Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YD7    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C6 C4 C C sing 1.53 N N
2 C4 O2 C O sing 1.43 N N
3 C4 C5 C C sing 1.53 N N
4 O2 C3 O C sing 1.43 N N
5 C3 C7 C C sing 1.53 N N
6 C3 C2 C C sing 1.53 N N
7 C7 N2 C N sing 1.47 N N
8 C2 N2 C N sing 1.47 N N
9 N2 C1 N C sing 1.35 N N
10 O1 C1 O C doub 1.22 N N
11 C1 N1 C N sing 1.35 N N
12 N1 C8 N C sing 1.47 N N
13 C8 C14 C C sing 1.51 N N
14 C8 C9 C C sing 1.53 N N
15 C15 C14 C C doub 1.38 N Y
16 C15 C16 C C sing 1.38 N Y
17 C14 C13 C C sing 1.37 N Y
18 C9 C10 C C sing 1.52 N N
19 C16 C17 C C doub 1.39 N Y
20 C10 C11 C C sing 1.52 N N
21 C13 C12 C C sing 1.51 N N
22 C13 C26 C C doub 1.38 N Y
23 C12 C11 C C sing 1.53 N N
24 C17 C26 C C sing 1.39 N Y
25 C17 C18 C C sing 1.48 N N
26 C25 C18 C C doub 1.4 N Y
27 C25 C24 C C sing 1.38 N Y
28 C18 N3 C N sing 1.33 N Y
29 C24 N7 C N doub 1.32 N Y
30 N3 C19 N C doub 1.32 N Y
31 N7 C19 N C sing 1.32 N Y
32 C19 N4 C N sing 1.38 N N
33 N4 C20 N C sing 1.41 N N
34 C21 C20 C C doub 1.36 N Y
35 C21 N5 C N sing 1.36 N Y
36 C20 C23 C C sing 1.4 N Y
37 C22 N5 C N sing 1.47 N N
38 N5 N6 N N sing 1.4 N Y
39 C23 N6 C N doub 1.31 N Y
40 N1 H1 N H sing 0.97 N N
41 C4 H2 C H sing 1.09 N N
42 C5 H3 C H sing 1.09 N N
43 C5 H4 C H sing 1.09 N N
44 C5 H5 C H sing 1.09 N N
45 C6 H6 C H sing 1.09 N N
46 C6 H7 C H sing 1.09 N N
47 C6 H8 C H sing 1.09 N N
48 C7 H9 C H sing 1.09 N N
49 C7 H10 C H sing 1.09 N N
50 C8 H11 C H sing 1.09 N N
51 C10 H12 C H sing 1.09 N N
52 C10 H13 C H sing 1.09 N N
53 C15 H14 C H sing 1.08 N N
54 C21 H15 C H sing 1.08 N N
55 C22 H16 C H sing 1.09 N N
56 C22 H17 C H sing 1.09 N N
57 C22 H18 C H sing 1.09 N N
58 C24 H19 C H sing 1.08 N N
59 C26 H20 C H sing 1.08 N N
60 C11 H21 C H sing 1.09 N N
61 C11 H22 C H sing 1.09 N N
62 C12 H23 C H sing 1.09 N N
63 C12 H24 C H sing 1.09 N N
64 C16 H25 C H sing 1.08 N N
65 C2 H26 C H sing 1.09 N N
66 C2 H27 C H sing 1.09 N N
67 C23 H28 C H sing 1.08 N N
68 C25 H29 C H sing 1.08 N N
69 C3 H30 C H sing 1.09 N N
70 C9 H31 C H sing 1.09 N N
71 C9 H32 C H sing 1.09 N N
72 N4 H33 N H sing 0.97 N N