data_YD7
#
_chem_comp.id YD7
_chem_comp.name
~{N}-[(5~{R})-2-[2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]-6,7,8,9-tetrahydro-5~{H}-benzo[7]annulen-5-yl]-3-propan-2-yloxy-azetidine-1-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H33 N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-22
_chem_comp.pdbx_modified_date 2022-01-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 475.586
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YD7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LTY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YD7 N1 N1 N 0 1 N N N N N N 12.491 9.751 50.894 3.650 -1.789 -0.311 N1 YD7 1
YD7 N3 N2 N 0 1 Y N N N N N 15.747 6.087 56.410 -3.216 -0.370 -0.027 N3 YD7 2
YD7 C4 C1 C 0 1 N N N N N N 14.139 13.073 46.148 6.380 4.067 -0.137 C4 YD7 3
YD7 C5 C2 C 0 1 N N N N N N 15.523 13.550 46.467 6.065 5.018 1.019 C5 YD7 4
YD7 C6 C3 C 0 1 N N N N N N 13.724 13.428 44.753 7.627 4.557 -0.876 C6 YD7 5
YD7 C7 C4 C 0 1 N N N N N N 13.897 9.457 47.449 5.477 0.910 1.600 C7 YD7 6
YD7 C8 C5 C 0 1 N N R N N N 11.932 9.040 52.045 2.785 -2.965 -0.184 C8 YD7 7
YD7 C10 C6 C 0 1 N N N N N N 10.131 9.478 53.858 2.983 -2.870 -2.685 C10 YD7 8
YD7 C13 C7 C 0 1 Y N N N N N 12.651 7.424 53.866 0.788 -1.567 -0.747 C13 YD7 9
YD7 C15 C8 C 0 1 Y N N N N N 14.365 8.458 52.527 0.633 -3.094 1.090 C15 YD7 10
YD7 C17 C9 C 0 1 Y N N N N N 15.001 6.926 54.289 -1.252 -1.726 0.504 C17 YD7 11
YD7 C20 C10 C 0 1 Y N N N N N 15.219 5.756 59.259 -6.348 1.403 -0.424 C20 YD7 12
YD7 C21 C11 C 0 1 Y N N N N N 14.082 6.351 58.751 -7.016 2.333 -1.154 C21 YD7 13
YD7 C22 C12 C 0 1 N N N N N N 11.881 7.057 59.783 -9.325 3.333 -1.112 C22 YD7 14
YD7 C24 C13 C 0 1 Y N N N N N 18.189 5.377 55.524 -4.699 -1.428 1.969 C24 YD7 15
YD7 C26 C14 C 0 1 Y N N N N N 13.646 6.761 54.578 -0.515 -1.159 -0.534 C26 YD7 16
YD7 C1 C15 C 0 1 N N N N N N 12.833 9.129 49.749 4.053 -1.128 0.792 C1 YD7 17
YD7 C11 C16 C 0 1 N N N N N N 10.546 8.430 54.886 1.774 -2.000 -2.970 C11 YD7 18
YD7 C12 C17 C 0 1 N N N N N N 11.195 7.210 54.244 1.587 -0.948 -1.875 C12 YD7 19
YD7 C14 C18 C 0 1 Y N N N N N 13.010 8.292 52.817 1.356 -2.524 0.056 C14 YD7 20
YD7 C16 C19 C 0 1 Y N N N N N 15.349 7.782 53.243 -0.670 -2.697 1.316 C16 YD7 21
YD7 C18 C20 C 0 1 Y N N N N N 16.044 6.256 55.112 -2.651 -1.297 0.744 C18 YD7 22
YD7 C19 C21 C 0 1 Y N N N N N 16.686 5.563 57.217 -4.464 0.014 0.186 C19 YD7 23
YD7 C2 C22 C 0 1 N N N N N N 13.541 11.345 48.652 5.467 0.700 -0.430 C2 YD7 24
YD7 C23 C23 C 0 1 Y N N N N N 14.956 5.569 60.614 -7.216 0.933 0.572 C23 YD7 25
YD7 C25 C24 C 0 1 Y N N N N N 17.292 5.916 54.619 -3.398 -1.860 1.783 C25 YD7 26
YD7 C3 C25 C 0 1 N N N N N N 14.375 10.966 47.380 5.443 1.945 0.467 C3 YD7 27
YD7 C9 C26 C 0 1 N N N N N N 11.229 10.052 52.962 2.830 -3.778 -1.480 C9 YD7 28
YD7 N2 N3 N 0 1 N N N N N N 13.354 9.890 48.743 4.848 -0.045 0.676 N2 YD7 29
YD7 N4 N4 N 0 1 N N N N N N 16.389 5.383 58.561 -5.021 0.981 -0.634 N4 YD7 30
YD7 N5 N5 N 0 1 Y N N N N N 13.224 6.484 59.791 -8.265 2.443 -0.631 N5 YD7 31
YD7 N6 N6 N 0 1 Y N N N N N 13.751 5.999 60.953 -8.361 1.555 0.447 N6 YD7 32
YD7 N7 N7 N 0 1 Y N N N N N 17.913 5.197 56.811 -5.195 -0.502 1.163 N7 YD7 33
YD7 O1 O1 O 0 1 N N N N N N 12.721 7.904 49.612 3.699 -1.507 1.892 O1 YD7 34
YD7 O2 O2 O 0 1 N N N N N N 14.094 11.633 46.191 6.617 2.755 0.377 O2 YD7 35
YD7 H1 H1 H 0 1 N N N N N N 12.625 10.740 50.960 3.935 -1.489 -1.188 H1 YD7 36
YD7 H2 H2 H 0 1 N N N N N N 13.425 13.502 46.867 5.536 4.040 -0.826 H2 YD7 37
YD7 H3 H3 H 0 1 N N N N N N 15.781 13.266 47.498 5.177 4.669 1.545 H3 YD7 38
YD7 H4 H4 H 0 1 N N N N N N 16.239 13.090 45.770 6.909 5.045 1.708 H4 YD7 39
YD7 H5 H5 H 0 1 N N N N N N 15.566 14.645 46.366 5.885 6.019 0.627 H5 YD7 40
YD7 H6 H6 H 0 1 N N N N N N 13.732 14.522 44.635 7.851 3.880 -1.700 H6 YD7 41
YD7 H7 H7 H 0 1 N N N N N N 14.425 12.977 44.036 7.446 5.558 -1.268 H7 YD7 42
YD7 H8 H8 H 0 1 N N N N N N 12.710 13.046 44.564 8.471 4.584 -0.187 H8 YD7 43
YD7 H9 H9 H 0 1 N N N N N N 13.154 9.157 46.696 6.486 0.626 1.898 H9 YD7 44
YD7 H10 H10 H 0 1 N N N N N N 14.698 8.704 47.495 4.846 1.173 2.449 H10 YD7 45
YD7 H11 H11 H 0 1 N N N N N N 11.185 8.313 51.695 3.124 -3.580 0.649 H11 YD7 46
YD7 H12 H12 H 0 1 N N N N N N 9.678 10.318 54.406 3.179 -3.488 -3.561 H12 YD7 47
YD7 H13 H13 H 0 1 N N N N N N 9.376 9.018 53.203 3.844 -2.223 -2.523 H13 YD7 48
YD7 H14 H14 H 0 1 N N N N N N 14.657 9.126 51.730 1.088 -3.846 1.718 H14 YD7 49
YD7 H15 H15 H 0 1 N N N N N N 13.910 6.651 57.728 -6.625 2.885 -1.995 H15 YD7 50
YD7 H16 H16 H 0 1 N N N N N N 11.456 7.010 60.796 -9.919 2.818 -1.867 H16 YD7 51
YD7 H17 H17 H 0 1 N N N N N N 11.932 8.106 59.455 -9.966 3.618 -0.278 H17 YD7 52
YD7 H18 H18 H 0 1 N N N N N N 11.243 6.487 59.091 -8.879 4.227 -1.549 H18 YD7 53
YD7 H19 H19 H 0 1 N N N N N N 19.166 5.087 55.165 -5.304 -1.842 2.762 H19 YD7 54
YD7 H20 H20 H 0 1 N N N N N N 13.360 6.097 55.380 -0.959 -0.405 -1.168 H20 YD7 55
YD7 H21 H21 H 0 1 N N N N N N 11.264 8.885 55.584 1.912 -1.500 -3.929 H21 YD7 56
YD7 H22 H22 H 0 1 N N N N N N 9.652 8.105 55.439 0.884 -2.628 -3.019 H22 YD7 57
YD7 H23 H23 H 0 1 N N N N N N 10.633 6.956 53.333 1.047 -0.091 -2.279 H23 YD7 58
YD7 H24 H24 H 0 1 N N N N N N 11.140 6.372 54.955 2.560 -0.629 -1.503 H24 YD7 59
YD7 H25 H25 H 0 1 N N N N N N 16.389 7.921 52.987 -1.237 -3.140 2.122 H25 YD7 60
YD7 H26 H26 H 0 1 N N N N N N 14.110 11.804 49.474 4.826 0.785 -1.308 H26 YD7 61
YD7 H27 H27 H 0 1 N N N N N N 12.629 11.931 48.465 6.473 0.359 -0.674 H27 YD7 62
YD7 H28 H28 H 0 1 N N N N N N 15.654 5.125 61.308 -6.981 0.185 1.314 H28 YD7 63
YD7 H29 H29 H 0 1 N N N N N N 17.552 6.064 53.581 -2.969 -2.614 2.426 H29 YD7 64
YD7 H30 H30 H 0 1 N N N N N N 15.446 11.011 47.626 4.517 2.517 0.412 H30 YD7 65
YD7 H31 H31 H 0 1 N N N N N N 11.991 10.508 53.611 3.675 -4.467 -1.442 H31 YD7 66
YD7 H32 H32 H 0 1 N N N N N N 10.777 10.828 52.327 1.907 -4.350 -1.577 H32 YD7 67
YD7 H33 H33 H 0 1 N N N N N N 17.095 4.931 59.106 -4.497 1.367 -1.354 H33 YD7 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YD7 C6 C4 SING N N 1
YD7 C4 O2 SING N N 2
YD7 C4 C5 SING N N 3
YD7 O2 C3 SING N N 4
YD7 C3 C7 SING N N 5
YD7 C3 C2 SING N N 6
YD7 C7 N2 SING N N 7
YD7 C2 N2 SING N N 8
YD7 N2 C1 SING N N 9
YD7 O1 C1 DOUB N N 10
YD7 C1 N1 SING N N 11
YD7 N1 C8 SING N N 12
YD7 C8 C14 SING N N 13
YD7 C8 C9 SING N N 14
YD7 C15 C14 DOUB Y N 15
YD7 C15 C16 SING Y N 16
YD7 C14 C13 SING Y N 17
YD7 C9 C10 SING N N 18
YD7 C16 C17 DOUB Y N 19
YD7 C10 C11 SING N N 20
YD7 C13 C12 SING N N 21
YD7 C13 C26 DOUB Y N 22
YD7 C12 C11 SING N N 23
YD7 C17 C26 SING Y N 24
YD7 C17 C18 SING N N 25
YD7 C25 C18 DOUB Y N 26
YD7 C25 C24 SING Y N 27
YD7 C18 N3 SING Y N 28
YD7 C24 N7 DOUB Y N 29
YD7 N3 C19 DOUB Y N 30
YD7 N7 C19 SING Y N 31
YD7 C19 N4 SING N N 32
YD7 N4 C20 SING N N 33
YD7 C21 C20 DOUB Y N 34
YD7 C21 N5 SING Y N 35
YD7 C20 C23 SING Y N 36
YD7 C22 N5 SING N N 37
YD7 N5 N6 SING Y N 38
YD7 C23 N6 DOUB Y N 39
YD7 N1 H1 SING N N 40
YD7 C4 H2 SING N N 41
YD7 C5 H3 SING N N 42
YD7 C5 H4 SING N N 43
YD7 C5 H5 SING N N 44
YD7 C6 H6 SING N N 45
YD7 C6 H7 SING N N 46
YD7 C6 H8 SING N N 47
YD7 C7 H9 SING N N 48
YD7 C7 H10 SING N N 49
YD7 C8 H11 SING N N 50
YD7 C10 H12 SING N N 51
YD7 C10 H13 SING N N 52
YD7 C15 H14 SING N N 53
YD7 C21 H15 SING N N 54
YD7 C22 H16 SING N N 55
YD7 C22 H17 SING N N 56
YD7 C22 H18 SING N N 57
YD7 C24 H19 SING N N 58
YD7 C26 H20 SING N N 59
YD7 C11 H21 SING N N 60
YD7 C11 H22 SING N N 61
YD7 C12 H23 SING N N 62
YD7 C12 H24 SING N N 63
YD7 C16 H25 SING N N 64
YD7 C2 H26 SING N N 65
YD7 C2 H27 SING N N 66
YD7 C23 H28 SING N N 67
YD7 C25 H29 SING N N 68
YD7 C3 H30 SING N N 69
YD7 C9 H31 SING N N 70
YD7 C9 H32 SING N N 71
YD7 N4 H33 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YD7 InChI InChI 1.03 InChI=1S/C26H33N7O2/c1-17(2)35-21-15-33(16-21)26(34)31-24-7-5-4-6-18-12-19(8-9-22(18)24)23-10-11-27-25(30-23)29-20-13-28-32(3)14-20/h8-14,17,21,24H,4-7,15-16H2,1-3H3,(H,31,34)(H,27,29,30)/t24-/m1/s1
YD7 InChIKey InChI 1.03 HYNHKNQQFCVJGQ-XMMPIXPASA-N
YD7 SMILES_CANONICAL CACTVS 3.385 CC(C)OC1CN(C1)C(=O)N[C@@H]2CCCCc3cc(ccc23)c4ccnc(Nc5cnn(C)c5)n4
YD7 SMILES CACTVS 3.385 CC(C)OC1CN(C1)C(=O)N[CH]2CCCCc3cc(ccc23)c4ccnc(Nc5cnn(C)c5)n4
YD7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)OC1CN(C1)C(=O)N[C@@H]2CCCCc3c2ccc(c3)c4ccnc(n4)Nc5cnn(c5)C
YD7 SMILES "OpenEye OEToolkits" 2.0.7 CC(C)OC1CN(C1)C(=O)NC2CCCCc3c2ccc(c3)c4ccnc(n4)Nc5cnn(c5)C
#
_pdbx_chem_comp_identifier.comp_id YD7
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[(5~{R})-2-[2-[(1-methylpyrazol-4-yl)amino]pyrimidin-4-yl]-6,7,8,9-tetrahydro-5~{H}-benzo[7]annulen-5-yl]-3-propan-2-yloxy-azetidine-1-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YD7 'Create component' 2021-02-22 RCSB
YD7 'Initial release' 2022-01-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YD7 N1 N 5.533 1.254 1
YD7 N3 N 10.362 -4.930 2
YD7 C4 C 4.473 8.287 3
YD7 C5 C 3.040 7.845 4
YD7 C6 C 4.807 9.750 5
YD7 C7 C 6.037 4.535 6
YD7 C8 C 5.199 -0.208 7
YD7 C10 C 3.086 -1.894 8
YD7 C13 C 6.372 -2.644 9
YD7 C15 C 7.713 -0.342 10
YD7 C17 C 9.072 -2.675 11
YD7 C20 C 12.949 -7.940 12
YD7 C21 C 14.321 -7.335 13
YD7 C22 C 16.813 -8.303 14
YD7 C24 C 12.966 -3.440 15
YD7 C26 C 7.713 -3.446 16
YD7 C1 C 4.433 2.274 17
YD7 C11 C 3.737 -3.245 18
YD7 C12 C 5.199 -3.579 19
YD7 C14 C 6.372 -1.144 20
YD7 C16 C 9.072 -1.112 21
YD7 C18 C 10.368 -3.430 22
YD7 C19 C 11.659 -5.685 23
YD7 C2 C 3.969 5.007 24
YD7 C23 C 13.100 -9.432 25
YD7 C25 C 11.670 -2.685 26
YD7 C3 C 5.239 5.805 27
YD7 C9 C 3.737 -0.542 28
YD7 N2 N 4.767 3.737 29
YD7 N4 N 11.653 -7.185 30
YD7 N5 N 15.321 -8.454 31
YD7 N6 N 14.566 -9.750 32
YD7 N7 N 12.960 -4.940 33
YD7 O1 O 3.000 1.832 34
YD7 O2 O 5.573 7.267 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YD7 C6 C4 SINGLE NONE 1
YD7 C4 O2 SINGLE NONE 2
YD7 C4 C5 SINGLE NONE 3
YD7 O2 C3 SINGLE NONE 4
YD7 C3 C7 SINGLE NONE 5
YD7 C3 C2 SINGLE NONE 6
YD7 C7 N2 SINGLE NONE 7
YD7 C2 N2 SINGLE NONE 8
YD7 N2 C1 SINGLE NONE 9
YD7 O1 C1 DOUBLE NONE 10
YD7 C1 N1 SINGLE NONE 11
YD7 C8 N1 SINGLE BEGINWEDGE 12
YD7 C8 C14 SINGLE NONE 13
YD7 C8 C9 SINGLE NONE 14
YD7 C15 C14 DOUBLE NONE 15
YD7 C15 C16 SINGLE NONE 16
YD7 C14 C13 SINGLE NONE 17
YD7 C9 C10 SINGLE NONE 18
YD7 C16 C17 DOUBLE NONE 19
YD7 C10 C11 SINGLE NONE 20
YD7 C13 C12 SINGLE NONE 21
YD7 C13 C26 DOUBLE NONE 22
YD7 C12 C11 SINGLE NONE 23
YD7 C17 C26 SINGLE NONE 24
YD7 C17 C18 SINGLE NONE 25
YD7 C25 C18 SINGLE NONE 26
YD7 C25 C24 DOUBLE NONE 27
YD7 C18 N3 DOUBLE NONE 28
YD7 C24 N7 SINGLE NONE 29
YD7 N3 C19 SINGLE NONE 30
YD7 N7 C19 DOUBLE NONE 31
YD7 C19 N4 SINGLE NONE 32
YD7 N4 C20 SINGLE NONE 33
YD7 C21 C20 DOUBLE NONE 34
YD7 C21 N5 SINGLE NONE 35
YD7 C20 C23 SINGLE NONE 36
YD7 C22 N5 SINGLE NONE 37
YD7 N5 N6 SINGLE NONE 38
YD7 C23 N6 DOUBLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YD7 MurckoScaffold S1 scaffold 'O=C(N[C@@H]1CCCCc2cc(-c3ccnc(Nc4cn[nH]c4)n3)ccc21)N1CCC1' InChI=1S/C22H25N7O/c30-22(29-10-3-11-29)28-20-5-2-1-4-15-12-16(6-7-18(15)20)19-8-9-23-21(27-19)26-17-13-24-25-14-17/h6-9,12-14,20H,1-5,10-11H2,(H,24,25)(H,28,30)(H,23,26,27)/t20-/m1/s1 BOKYYIAIAFEJGU-HXUWFJFHSA-N
YD7 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YD7 pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
YD7 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
YD7 Z54628578 F4 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YD7 N1 S1 1
YD7 N3 S1 1
YD7 C7 S1 1
YD7 C8 S1 1
YD7 C10 S1 1
YD7 C13 S1 1
YD7 C15 S1 1
YD7 C17 S1 1
YD7 C20 S1 1
YD7 C21 S1 1
YD7 C24 S1 1
YD7 C26 S1 1
YD7 C1 S1 1
YD7 C11 S1 1
YD7 C12 S1 1
YD7 C14 S1 1
YD7 C16 S1 1
YD7 C18 S1 1
YD7 C19 S1 1
YD7 C2 S1 1
YD7 C23 S1 1
YD7 C25 S1 1
YD7 C3 S1 1
YD7 C9 S1 1
YD7 N2 S1 1
YD7 N4 S1 1
YD7 N5 S1 1
YD7 N6 S1 1
YD7 N7 S1 1
YD7 O1 S1 1
YD7 C13 F1 1
YD7 C14 F1 1
YD7 C15 F1 1
YD7 C16 F1 1
YD7 C17 F1 1
YD7 C26 F1 1
YD7 C21 F2 1
YD7 C20 F2 1
YD7 C23 F2 1
YD7 N6 F2 1
YD7 N5 F2 1
YD7 C25 F3 1
YD7 C18 F3 1
YD7 N3 F3 1
YD7 C19 F3 1
YD7 N7 F3 1
YD7 C24 F3 1
YD7 C20 F4 1
YD7 N4 F4 1
YD7 C19 F4 1
YD7 N3 F4 1
YD7 C18 F4 1
YD7 C25 F4 1
YD7 C24 F4 1
YD7 N7 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id YD7
_pdbe_chem_comp_rdkit_properties.exactmw 475.270
_pdbe_chem_comp_rdkit_properties.amw 475.597
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.462
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 251.939
_pdbe_chem_comp_rdkit_properties.tpsa 97.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.956
_pdbe_chem_comp_rdkit_properties.CrippenMR 130.866
_pdbe_chem_comp_rdkit_properties.chi0v 16.947
_pdbe_chem_comp_rdkit_properties.chi1v 9.193
_pdbe_chem_comp_rdkit_properties.chi2v 3.968
_pdbe_chem_comp_rdkit_properties.chi3v 3.968
_pdbe_chem_comp_rdkit_properties.chi4v 2.569
_pdbe_chem_comp_rdkit_properties.chi0n 49.947
_pdbe_chem_comp_rdkit_properties.chi1n 25.587
_pdbe_chem_comp_rdkit_properties.chi2n 3.968
_pdbe_chem_comp_rdkit_properties.chi3n 3.968
_pdbe_chem_comp_rdkit_properties.chi4n 2.569
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.460
_pdbe_chem_comp_rdkit_properties.kappa1 6.262
_pdbe_chem_comp_rdkit_properties.kappa2 10.032
_pdbe_chem_comp_rdkit_properties.kappa3 5.453
_pdbe_chem_comp_rdkit_properties.Phi 1.795
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
YD7 UniChem SureChEMBL SCHEMBL16794012
YD7 UniChem PubChem 118139372
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YD7 N1 -3.023 -2.018 0.636 ETKDGv3 1
YD7 N3 3.577 0.495 0.042 ETKDGv3 2
YD7 C4 -6.375 3.529 -0.973 ETKDGv3 3
YD7 C5 -6.087 4.922 -0.415 ETKDGv3 4
YD7 C6 -6.271 3.549 -2.505 ETKDGv3 5
YD7 C7 -5.094 0.511 -1.539 ETKDGv3 6
YD7 C8 -1.971 -3.043 0.681 ETKDGv3 7
YD7 C10 -1.576 -5.322 1.804 ETKDGv3 8
YD7 C13 0.609 -3.319 0.395 ETKDGv3 9
YD7 C15 -0.369 -1.108 0.778 ETKDGv3 10
YD7 C17 2.055 -1.323 0.503 ETKDGv3 11
YD7 C20 6.222 3.134 -0.781 ETKDGv3 12
YD7 C21 7.356 2.576 -1.185 ETKDGv3 13
YD7 C22 9.470 3.478 -2.298 ETKDGv3 14
YD7 C24 5.816 -0.943 0.749 ETKDGv3 15
YD7 C26 1.845 -2.783 0.345 ETKDGv3 16
YD7 C1 -3.454 -1.415 -0.591 ETKDGv3 17
YD7 C11 -0.051 -5.399 1.641 ETKDGv3 18
YD7 C12 0.442 -4.818 0.307 ETKDGv3 19
YD7 C14 -0.576 -2.431 0.605 ETKDGv3 20
YD7 C16 0.986 -0.535 0.705 ETKDGv3 21
YD7 C18 3.419 -0.738 0.437 ETKDGv3 22
YD7 C19 4.878 1.101 -0.044 ETKDGv3 23
YD7 C2 -5.179 0.394 0.441 ETKDGv3 24
YD7 C23 6.396 4.580 -0.904 ETKDGv3 25
YD7 C25 4.616 -1.523 0.825 ETKDGv3 26
YD7 C3 -5.883 1.287 -0.531 ETKDGv3 27
YD7 C9 -2.117 -3.891 1.963 ETKDGv3 28
YD7 N2 -4.411 -0.359 -0.567 ETKDGv3 29
YD7 N4 4.990 2.469 -0.462 ETKDGv3 30
YD7 N5 8.258 3.625 -1.508 ETKDGv3 31
YD7 N6 7.585 4.840 -1.342 ETKDGv3 32
YD7 N7 5.930 0.416 0.302 ETKDGv3 33
YD7 O1 -2.987 -1.805 -1.695 ETKDGv3 34
YD7 O2 -5.436 2.626 -0.416 ETKDGv3 35
YD7 H1 -3.406 -1.640 1.533 ETKDGv3 36
YD7 H2 -7.421 3.278 -0.676 ETKDGv3 37
YD7 H3 -6.820 5.658 -0.810 ETKDGv3 38
YD7 H4 -6.168 4.907 0.693 ETKDGv3 39
YD7 H5 -5.061 5.247 -0.691 ETKDGv3 40
YD7 H6 -6.582 2.570 -2.924 ETKDGv3 41
YD7 H7 -5.226 3.759 -2.819 ETKDGv3 42
YD7 H8 -6.941 4.328 -2.927 ETKDGv3 43
YD7 H9 -5.744 -0.086 -2.216 ETKDGv3 44
YD7 H10 -4.359 1.130 -2.099 ETKDGv3 45
YD7 H11 -2.118 -3.708 -0.198 ETKDGv3 46
YD7 H12 -1.850 -5.893 2.718 ETKDGv3 47
YD7 H13 -2.077 -5.827 0.949 ETKDGv3 48
YD7 H14 -1.185 -0.426 0.973 ETKDGv3 49
YD7 H15 7.553 1.523 -1.333 ETKDGv3 50
YD7 H16 10.009 2.555 -1.996 ETKDGv3 51
YD7 H17 10.134 4.352 -2.132 ETKDGv3 52
YD7 H18 9.207 3.416 -3.375 ETKDGv3 53
YD7 H19 6.704 -1.489 1.037 ETKDGv3 54
YD7 H20 2.699 -3.425 0.178 ETKDGv3 55
YD7 H21 0.454 -4.902 2.498 ETKDGv3 56
YD7 H22 0.235 -6.473 1.676 ETKDGv3 57
YD7 H23 1.410 -5.305 0.055 ETKDGv3 58
YD7 H24 -0.251 -5.078 -0.521 ETKDGv3 59
YD7 H25 1.099 0.534 0.836 ETKDGv3 60
YD7 H26 -5.879 -0.278 0.986 ETKDGv3 61
YD7 H27 -4.496 0.939 1.131 ETKDGv3 62
YD7 H28 5.653 5.338 -0.696 ETKDGv3 63
YD7 H29 4.535 -2.536 1.195 ETKDGv3 64
YD7 H30 -6.984 1.108 -0.559 ETKDGv3 65
YD7 H31 -3.198 -3.983 2.213 ETKDGv3 66
YD7 H32 -1.628 -3.388 2.826 ETKDGv3 67
YD7 H33 4.113 3.036 -0.497 ETKDGv3 68
#